Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0162
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49470.2 68418.m06121 protein kinase family protein contains ...    28   5.4  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    28   5.4  
At5g55890.1 68418.m06967 hypothetical protein contains Pfam prof...    27   9.5  
At5g55880.1 68418.m06966 hypothetical protein contains Pfam prof...    27   9.5  
At4g00890.1 68417.m00120 proline-rich family protein contains pr...    27   9.5  
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    27   9.5  
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    27   9.5  

>At5g49470.2 68418.m06121 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 834

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 107 QEISIRNKIQFIKVLQLY-VITKPARMCFHTNLPPLFGV 220
           QE+S+  +++   VL     +T P R+C  T   P FG+
Sbjct: 535 QEVSLMKRLRHPNVLLFMGAVTSPQRLCIVTEFLPRFGL 573


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +3

Query: 555 GLSQSTPLSPVCGSPH----PLLAGHRAEVIVPPSQGASHVTSSAARSPLENPSAPAIV 719
           G+   +P+S    SP     P  +  ++  +  P+   +   +++A SP+E+P +PA V
Sbjct: 18  GVGGQSPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPV 76


>At5g55890.1 68418.m06967 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 366

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/66 (30%), Positives = 26/66 (39%)
 Frame = +3

Query: 519 SSTAHSRPLLDIGLSQSTPLSPVCGSPHPLLAGHRAEVIVPPSQGASHVTSSAARSPLEN 698
           S    S PLL  GLS S   +P C     +  G     +V  +  A H T    + PLE 
Sbjct: 18  SVLVRSSPLLSNGLSSSLRQTPPCTIIDAVPCGEDLGKLVIYNANAVHFTYLEKKVPLEL 77

Query: 699 PSAPAI 716
              P +
Sbjct: 78  VDNPMV 83


>At5g55880.1 68418.m06966 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 366

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/66 (30%), Positives = 26/66 (39%)
 Frame = +3

Query: 519 SSTAHSRPLLDIGLSQSTPLSPVCGSPHPLLAGHRAEVIVPPSQGASHVTSSAARSPLEN 698
           S    S PLL  GLS S   +P C     +  G     +V  +  A H T    + PLE 
Sbjct: 18  SVLVRSSPLLSNGLSSSLRQTPPCTIIDAVPCGEDLGKLVIYNANAVHFTYLEKKVPLEL 77

Query: 699 PSAPAI 716
              P +
Sbjct: 78  VDNPMV 83


>At4g00890.1 68417.m00120 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 431

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 516 SSSTAHSRPLLDIGLSQSTPLSPVCGSPHPLLA-----GHRAEVIVPPSQGASHVTSSAA 680
           S S   S P  D      T  SP   SP PLL+      H+++  +PP    + ++ S+ 
Sbjct: 242 SQSPPISPPKSDKQARSQTHSSP---SPPPLLSPKASENHQSKSPMPPPSPTAQISLSSL 298

Query: 681 RSPLENPS 704
           +SP+ +P+
Sbjct: 299 KSPIPSPA 306


>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 691 SGDRAAEDVTWDAPWLGGT 635
           SG RA ED+ WDA  + GT
Sbjct: 706 SGSRAVEDIDWDALTVKGT 724


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 555 GLSQSTPLSPVCGSPHPLLAGHRAEVIVP 641
           G     P  P+ G  HP+  GH  + +VP
Sbjct: 435 GFHHHPPGGPMSGPHHPMFIGHNGQGLVP 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,748,279
Number of Sequences: 28952
Number of extensions: 335721
Number of successful extensions: 904
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)