Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0160
(381 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 30 0.11
SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|c... 27 1.3
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 3.0
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 4.0
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 4.0
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 7.0
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 24 7.0
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 24 7.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 24 7.0
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 24 9.3
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 24 9.3
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 9.3
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 24 9.3
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 30.3 bits (65), Expect = 0.11
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 78 LSIETDEFQKYCKNYMSFKHKPMSDIREALDIAQ----NVIKFDTEVIRRNGFIISSDPV 245
LS D F +++ H+ + D+ AL ++ +++KF E + RN +S P
Sbjct: 333 LSFPVDSFLAERSSWL-IVHREVGDLSNALSVSMVRLVDILKFSVESVNRNQHNTTSKPF 391
Query: 246 NTKLILENVESL 281
+ EN+ SL
Sbjct: 392 PRIMCKENLRSL 403
>SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 1.3
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 243 VNTKLILENVESLAGFEIQDAIK-IEPAILKNNYNALLEMK 362
++TK+ EN E+ A E+Q A+K +E A + Y +LLEM+
Sbjct: 2 LSTKIDAENAENAAEIEMQFAVKAVEQAQI---YWSLLEMR 39
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 156 ECL-TLVYV*KTCNFYSIFGTRQFQWTISISNSF 58
+CL L V K +++S+F ++ WT I N F
Sbjct: 307 DCLFALRQVSKRSSYHSVFSAQESAWTDFIKNGF 340
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.0 bits (52), Expect = 4.0
Identities = 24/105 (22%), Positives = 43/105 (40%)
Frame = +3
Query: 3 RGITDSTTSILQVRMCVLENYLKWRLSIETDEFQKYCKNYMSFKHKPMSDIREALDIAQN 182
+ + D + +LQ L NY W L E + Q K Y + ++ RE I +
Sbjct: 269 KSVDDRKSRLLQCFESHL-NYKAWHLEFENEAHQYEIKGYRLWLQNILN--RENCQITKL 325
Query: 183 VIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIE 317
+ + ++ + S D K +N ++L FE +K+E
Sbjct: 326 DFEREFSQLKLKDLLDSRDSGKRKSRKKNAKTLNPFETAQ-LKLE 369
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.0 bits (52), Expect = 4.0
Identities = 16/70 (22%), Positives = 33/70 (47%)
Frame = -3
Query: 223 NPLRLITSVSNLITFCAISKASRMSDIGLCLKDM*FLQYFWNSSVSMDNLHFK*FSNTHI 44
NPL+L S I+ ++ S++ +K+ + F+N++ M N S+ ++
Sbjct: 662 NPLKLTDSQRQRISLLKMATYSKLHHAVEGVKESFEQRKFFNAADIMKNFLLNDLSSVYV 721
Query: 43 RTCKIDVVES 14
+ DV +S
Sbjct: 722 ELTRFDVKDS 731
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 261 LENVESLAGFEIQDAIKIEPAILKNNYNALLEMKSILEEY 380
L++ E+ I AIK P ILK + NA+ ++++L ++
Sbjct: 222 LKSSEAPMHVHICHAIKNLPKILKKHDNAVRSLEAVLAKF 261
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 24.2 bits (50), Expect = 7.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -1
Query: 366 YSSFLTKHYSYFLRWQ---VRFL*RPVFQSQLTIRH 268
Y F+T +SY LR++ + + P F ++LT H
Sbjct: 16 YKLFITHKFSYLLRFETVTLNNIRSPQFYAKLTFSH 51
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +3
Query: 174 AQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNY 341
+ +IK + V G +++ D T LIL + + + + ++ A++KN+Y
Sbjct: 249 SNEMIKAYSHVPHPFGTVLADDVFRTGLILSDTDFRQFVQYGNLTGLDMAVVKNSY 304
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 24.2 bits (50), Expect = 7.0
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +3
Query: 216 NGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNY 341
N + +SDP + I +++ L + +D +++ P + NY
Sbjct: 159 NNYDYTSDPSSPNYISSSLDQLPHLDDEDDLQLTPIKEERNY 200
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 322 AGSIFIASCISKPANDSTFSSINLVLTGS 236
AGSI+I S K + +TFS N+ + S
Sbjct: 95 AGSIYIPSNYHKSFSPNTFSGFNVKRSAS 123
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 180 FVQYLKLLECLTLVYV*KTCNFYSIFGTRQ 91
F Y+ CL +V CN Y + TR+
Sbjct: 100 FDLYIDQFRCLHIVMEFLDCNLYQLISTRK 129
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 10 LQIQPHLFYKFVCAYWKTI*NGDCPL 87
LQ H F++ W T N CPL
Sbjct: 782 LQACKHFFHQACIDQWLTTGNNSCPL 807
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 137 MFERHVIFTVFLELVSFNGQSPFQIVFQY 51
M+E H ++ + L S+N IV QY
Sbjct: 112 MYEIHTVYVDYKHLTSYNDVLALAIVEQY 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,152
Number of Sequences: 5004
Number of extensions: 31703
Number of successful extensions: 107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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