Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0160
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0008 + 27591454-27592154,27595078-27595253,27595774-275959... 27 3.8
05_04_0344 + 20442041-20442374,20443115-20443210,20444512-204446... 27 3.8
07_03_1684 - 28637242-28637805,28638490-28638684,28638786-28638992 27 6.6
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 27 6.6
05_02_0026 + 5716467-5716655,5716833-5718797 26 8.7
05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557... 26 8.7
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 26 8.7
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 26 8.7
>11_08_0008 +
27591454-27592154,27595078-27595253,27595774-27595968,
27598124-27599184
Length = 710
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 55 WKTI*NGDCPLKLTSSKNTVKITCLS--NINQCQ 150
W NG CP S+ V C+S NIN+C+
Sbjct: 265 WAIRKNGSCPSAARSAAGQVAPACVSANNINECE 298
>05_04_0344 +
20442041-20442374,20443115-20443210,20444512-20444633,
20444781-20445029,20445300-20445549,20446036-20446262
Length = 425
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 246 NTKLILENVESLAGFEIQDAIKIEPAILKNNYNALLEMKSILE 374
N +++ +E+L G ++E N+YN LLEM + E
Sbjct: 103 NGYTMVDEIENLTGINEDFPNQVESKAHNNSYNGLLEMGVVTE 145
>07_03_1684 - 28637242-28637805,28638490-28638684,28638786-28638992
Length = 321
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 231 SSDPVNTKLILENVESLAGFEIQDAIKI 314
+ D + KL N SL GF++ DAIK+
Sbjct: 80 TDDMIGEKLAKPNNMSLRGFDVIDAIKV 107
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 26.6 bits (56), Expect = 6.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 103 WNSSVSMDNLHFK*FSNTHIRTCKIDVVESV 11
W +S D LHF N + C ++ +ES+
Sbjct: 180 WQTSALCDGLHFTPLGNKILFDCVLETLESI 210
>05_02_0026 + 5716467-5716655,5716833-5718797
Length = 717
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 229 IINPLRLITSVSNLI 185
I+NPL LITSV N++
Sbjct: 469 IVNPLELITSVKNIL 483
>05_02_0012 -
5575574-5575849,5575889-5575954,5576103-5576926,
5577333-5577405,5577936-5577983
Length = 428
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 295 ISKPANDSTFSSINLVLTGSDEIINPLRLITSVSNLITFCAISKAS-RMSDIGLC 134
+S+P + S S N V + + PL L + + FCAI +A+ R G C
Sbjct: 90 LSRPPHHSVLFSPNGVKQRNQMTLLPLDLRAHLVKFVFFCAIRRAAIRAQGRGRC 144
>03_05_0001 -
19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = -3
Query: 304 ASCISKPANDSTFSSINLVLTGSDEIINPLRLITSVSNLITFCAISKASRMSDI 143
A+C ++ DS +S L++ S+E+ + + + S+ + ITF A R+ ++
Sbjct: 261 ANCFAEDNVDSQGTSNTLLMEASNELFDIWKNVNSIVDNITFDDNGLAFRLEEL 314
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 316 SIFIASC-ISKPANDSTFSSINLVLTGSDEIINPLRLITSVS 194
SI +SC + P D+T ++INL G E +N + LI S+S
Sbjct: 2536 SILDSSCGMVTPIFDTTIANINLATHGKFETMNAV-LICSIS 2576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,956,400
Number of Sequences: 37544
Number of extensions: 159197
Number of successful extensions: 387
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -