Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0160
(381 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50611| Best HMM Match : LytTR (HMM E-Value=2.6e-23) 30 0.73
SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37) 29 1.7
SB_24970| Best HMM Match : COX5C (HMM E-Value=4.7) 27 3.9
SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3) 27 6.8
SB_13715| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-10) 27 6.8
SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44) 26 9.0
SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0) 26 9.0
SB_41527| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 26 9.0
SB_36794| Best HMM Match : FTHFS (HMM E-Value=0) 26 9.0
SB_20746| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 26 9.0
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 26 9.0
SB_7563| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 26 9.0
SB_52218| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 26 9.0
SB_29181| Best HMM Match : TFIIS_M (HMM E-Value=4.8) 26 9.0
SB_17009| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 26 9.0
SB_14477| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 26 9.0
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_50611| Best HMM Match : LytTR (HMM E-Value=2.6e-23)
Length = 179
Score = 29.9 bits (64), Expect = 0.73
Identities = 19/70 (27%), Positives = 37/70 (52%)
Frame = +3
Query: 159 EALDIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNN 338
+A+D I FD + N FI + P+ T I ENV + F ++ + ++K +
Sbjct: 36 QAVDYLLKPISFDRFLQAVNKFIGENIPIETPTIRENVAEESEFIF---VRSDRKMIKID 92
Query: 339 YNALLEMKSI 368
++A+L ++S+
Sbjct: 93 FDAILHVESL 102
>SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37)
Length = 947
Score = 28.7 bits (61), Expect = 1.7
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 132 KHKPMSDIREALDIAQNVIKFD-TEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAI 308
+ + SD+ E D Q V+K + +RRNGF+ + + + +L+ + S +G + D
Sbjct: 706 RERQSSDL-EDYDKVQKVLKEEIVNPLRRNGFVRADRVLKLRRLLDKLGSTSG--LTDEE 762
Query: 309 KIEPAILKNNYNALLEMKSILE 374
K L + +L+ +S+L+
Sbjct: 763 KDPEEFLNTLLHQVLKSESLLQ 784
>SB_24970| Best HMM Match : COX5C (HMM E-Value=4.7)
Length = 158
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 126 TCNFYSIFGTRQFQWTISISNSFPIRTYELVK*MWLNL 13
T + Y I R+F+W N FP RT L M L L
Sbjct: 105 TLSLYVILARRRFEWQRRQKNLFPSRTEWLSTRMCLEL 142
>SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)
Length = 345
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 123 MSFKHKPMSDIREALDIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENV 272
M+F+ + D+ E LD++Q K D + +N F ++ D T + EN+
Sbjct: 1 MTFRSPMVKDLVEGLDLSQTEWKLD---LYKNMFYVTGDRSATFISSENL 47
>SB_13715| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-10)
Length = 596
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 301 SCISKPANDSTFSSINLVLTGSDEIINPLRLITSVS 194
+C PA+D T + +L S +I +PL LI +S
Sbjct: 52 ACKELPAHDDTLVTKREILRESSKIYDPLGLIIPIS 87
>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
Length = 474
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 84 IETDEFQKYCKNYMSFKHKPMSDIREAL 167
+E D+ QK C ++ KH DI + +
Sbjct: 209 VENDKLQKICSKLLNLKHISFRDINKVV 236
>SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 824
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 168 DIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNYNA 347
D+ Q+V +E + R + +L +NVES +D K PA +
Sbjct: 213 DLIQHVNIVASEELERKSKLTKITKKVNQLTSDNVESQGNGGRKDKGKTAPAAVSTEDLI 272
Query: 348 LLEMKSILEE 377
L E+KS+ E
Sbjct: 273 LAELKSVKSE 282
>SB_41527| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 358
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 168 DIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNYNA 347
D+ Q+V +E + R + +L +NVES +D K PA +
Sbjct: 205 DLIQHVNIVASEELERKSKLTKITKKVNQLTRDNVESQGNGGRKDKGKTAPAAVSTEDLI 264
Query: 348 LLEMKSILEE 377
L E+KS+ E
Sbjct: 265 LAELKSVKSE 274
>SB_36794| Best HMM Match : FTHFS (HMM E-Value=0)
Length = 388
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 189 KFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAIL 329
K +++ +GF+++ P+ T+ EN+E + A +IE A+L
Sbjct: 167 KIALKLVGPDGFVVAGQPLATEYTSENLELVRSGMCNLAKQIENALL 213
>SB_20746| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 444
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 168 DIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNYNA 347
D+ Q+V +E + R + +L +NVES +D K PA +
Sbjct: 291 DLIQHVNIVASEELERKSKLTKITKKVNQLTSDNVESQGNGGRKDKGKTAPAAVSTEDLI 350
Query: 348 LLEMKSILEE 377
L E+KS+ E
Sbjct: 351 LAELKSVKSE 360
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 168 DIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNYNA 347
D+ Q+V +E + R + +L +NVES +D K PA +
Sbjct: 643 DLIQHVNIVASEELERKSKLTKITKKVNQLTSDNVESQGNGGRKDKGKTAPAAVSTEDLI 702
Query: 348 LLEMKSILEE 377
L E+KS+ E
Sbjct: 703 LAELKSVKSE 712
>SB_7563| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 195
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 168 DIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNYNA 347
D+ Q+V +E + R + +L +NVES +D K PA +
Sbjct: 42 DLIQHVNIVASEELERKSKLTKITKKVNQLTSDNVESQGNGGRKDKGKTAPAAVSTEDLI 101
Query: 348 LLEMKSILEE 377
L E+KS+ E
Sbjct: 102 LAELKSVKSE 111
>SB_52218| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 175
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 168 DIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNYNA 347
D+ Q+V +E + R + +L +NVES +D K PA +
Sbjct: 22 DLIQHVNIVASEELERKSKLTKITKKVNQLTSDNVESQGNGGRKDKGKTAPAAVSTEDLI 81
Query: 348 LLEMKSILEE 377
L E+KS+ E
Sbjct: 82 LAELKSVKSE 91
>SB_29181| Best HMM Match : TFIIS_M (HMM E-Value=4.8)
Length = 121
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 168 DIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNYNA 347
D+ Q+V +E + R + +L +NVES +D K PA +
Sbjct: 42 DLIQHVNIVASEELERKSKLTKITKKVNQLTSDNVESQGNGGRKDKGKTAPAAVSTEDLI 101
Query: 348 LLEMKSILEE 377
L E+KS+ E
Sbjct: 102 LAELKSVKSE 111
>SB_17009| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 268
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 168 DIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNYNA 347
D+ Q+V +E + R + +L +NVES +D K PA +
Sbjct: 115 DLIQHVNIVASEELERKSKLTKITKKVNQLTSDNVESQGNGGRKDKGKTAPAAVSTEDLI 174
Query: 348 LLEMKSILEE 377
L E+KS+ E
Sbjct: 175 LAELKSVKSE 184
>SB_14477| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 402
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 168 DIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNYNA 347
D+ Q+V +E + R + +L +NVES +D K PA +
Sbjct: 249 DLIQHVNIVASEELERKSKLTKITKKVNQLTSDNVESQGNGGRKDKGKTAPAAVSTEDLI 308
Query: 348 LLEMKSILEE 377
L E+KS+ E
Sbjct: 309 LAELKSVKSE 318
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 168 DIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIKIEPAILKNNYNA 347
D+ Q+V +E + R + +L +NVES +D K PA +
Sbjct: 291 DLIQHVNIVASEELERKSKLTKITKKVNQLTSDNVESQGNGGRKDKGKTAPAAVSTEDLI 350
Query: 348 LLEMKSILEE 377
L E+KS+ E
Sbjct: 351 LAELKSVKSE 360
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,124,098
Number of Sequences: 59808
Number of extensions: 202436
Number of successful extensions: 470
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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