Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0160
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   4.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 79  CPLKLTSSKNTVKITCLSNIN 141
           C L +   +N V +T  SN+N
Sbjct: 519 CSLAVAKQQNQVPLTSSSNVN 539


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 286 PANDSTFSSINLVLTGSDEIINPLRLITSVS 194
           P   S F   N+   GS++I+N   L  +VS
Sbjct: 280 PFMKSQFGENNVQYQGSEDILNTQSLAKAVS 310


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 162 ALDIAQNVIKFDTEVIRRNGFIISSDPVNTKLILEN-VESLAGFEIQDAIKIEPAILKNN 338
           ALD++    K  ++V+   G +      N  ++LEN + +    ++    K  P ++K N
Sbjct: 8   ALDVSSAASKTSSKVMLTRGTVNDIVSRNITMVLENLLMNYENNQLPTHGKGTPTVVKTN 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,577
Number of Sequences: 438
Number of extensions: 1863
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)