Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0160
         (381 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45480.1 68415.m05656 expressed protein                             30   0.45 
At3g61760.1 68416.m06927 dynamin-like protein B (DL1B) identical...    27   4.2  
At3g13960.1 68416.m01762 expressed protein identical to transcri...    26   7.4  
At1g67140.1 68414.m07638 expressed protein                             26   7.4  
At5g04360.1 68418.m00428 pullulanase, putative / starch debranch...    26   9.7  
At3g14120.2 68416.m01786 expressed protein similar to Nuclear po...    26   9.7  
At3g14120.1 68416.m01785 expressed protein similar to Nuclear po...    26   9.7  
At1g33500.1 68414.m04146 hypothetical protein                          26   9.7  

>At2g45480.1 68415.m05656 expressed protein
          Length = 429

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 3   RGITDSTTSILQVRMCVLENYLKWRLSIETDEFQKYCKNYMSFKHKPMSDIRE-ALDIAQ 179
           +G+T   T   +   C   +  KWR S     F+KYC+ +M    K    + E + ++A 
Sbjct: 78  KGVTHIDTLETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRKLVESSSEVAS 137

Query: 180 NVIKFD 197
           +  K+D
Sbjct: 138 SSTKYD 143


>At3g61760.1 68416.m06927 dynamin-like protein B (DL1B) identical to
           dynamin-like protein B [Arabidopsis thaliana]
           GI:27543504; strong similarity to GTP-binding protein
           [Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A
           [Glycine max] GI:1218004; contains Pfam profiles
           PF01031: Dynamin central region, PF00350: Dynamin
           family, PF02212: Dynamin GTPase effector domain
          Length = 610

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/67 (20%), Positives = 27/67 (40%)
 Frame = +3

Query: 114 KNYMSFKHKPMSDIREALDIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFE 293
           K Y  F H P     +   + Q +         R+  +IS+ P++  +   NV +L   +
Sbjct: 83  KEYAEFMHLPKKKFTDFAAVRQEISDETDRETGRSSKVISTVPIHLSIFSPNVVNLTLVD 142

Query: 294 IQDAIKI 314
           +    K+
Sbjct: 143 LPGLTKV 149


>At3g13960.1 68416.m01762 expressed protein identical to
           transcription activator GRL5 [Arabidopsis thaliana]
           GI:21539888 (unpublished); supporting cDNA
           gi|21539887|gb|AY102638.1|
          Length = 397

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 69  KWRLSIETDEFQKYCKNYMSFKHKPMSDIREALD 170
           KWR S E     KYC+ +M   H+  +  R++LD
Sbjct: 94  KWRCSREAYPDSKYCEKHM---HRGRNRARKSLD 124


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 120 YMSFKHKPMSDIREALDIAQNVIKFDTEVIRRNGFII 230
           Y  F  K  S + E   I   ++KF+ + +R+  FI+
Sbjct: 134 YRHFGKKITSGLFETTSIVTKLVKFNEDFVRQEAFIL 170


>At5g04360.1 68418.m00428 pullulanase, putative / starch debranching
           enzyme, putative similar to pullulanase [Spinacia
           oleracea] GI:634093 (EC 3.2.1.41); contains Pfam
           profiles PF00128: Alpha amylase catalytic domain,
           PF02922: Isoamylase N-terminal domain
          Length = 965

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 81  SIETDEFQKY--CKNYMSFKHKPMSDIREALDIAQNVIKFDTE 203
           S+  D  +K+   +NY SFK     DIR+ +     V+ FD E
Sbjct: 141 SLPADVIEKFPHIRNYKSFKVPKDLDIRDLVKSQLAVVCFDAE 183


>At3g14120.2 68416.m01786 expressed protein similar to Nuclear pore
           complex protein Nup107 (Nucleoporin Nup107) (107 kDa
           nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
           norvegicus]
          Length = 1077

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 18/61 (29%), Positives = 34/61 (55%)
 Frame = +3

Query: 93  DEFQKYCKNYMSFKHKPMSDIREALDIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENV 272
           D+F++Y K + +  H+ M     + ++++N + +D       G  I S P NT L+LEN+
Sbjct: 21  DQFRRYRKRHSTSPHEEML----SSNVSENRLLYD-------GHNIHS-PTNTALLLENI 68

Query: 273 E 275
           +
Sbjct: 69  K 69


>At3g14120.1 68416.m01785 expressed protein similar to Nuclear pore
           complex protein Nup107 (Nucleoporin Nup107) (107 kDa
           nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
           norvegicus]
          Length = 1101

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 18/61 (29%), Positives = 34/61 (55%)
 Frame = +3

Query: 93  DEFQKYCKNYMSFKHKPMSDIREALDIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENV 272
           D+F++Y K + +  H+ M     + ++++N + +D       G  I S P NT L+LEN+
Sbjct: 21  DQFRRYRKRHSTSPHEEML----SSNVSENRLLYD-------GHNIHS-PTNTALLLENI 68

Query: 273 E 275
           +
Sbjct: 69  K 69


>At1g33500.1 68414.m04146 hypothetical protein
          Length = 254

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = +3

Query: 132 KHKPMSDIREALDIAQNVIKFDTEVIRRNGFIISSDPVNTKLILENVESLAGFEIQDAIK 311
           K +  +++ E  D A+   K D   + R+  +  +  +  KL +ENV+        + + 
Sbjct: 145 KKETRNNLMELSDSAR--AKLDQAKLMRSNLLQENSKI--KLSIENVKHKINEFKPELMS 200

Query: 312 IEPAILKNNYNALLEMKSILEEY 380
           ++  IL+  Y ALL  +S   EY
Sbjct: 201 VDIKILEEEYTALLSDESGEAEY 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,829,444
Number of Sequences: 28952
Number of extensions: 148685
Number of successful extensions: 386
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)