Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0158
         (745 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q894B2 Cluster: Trk system potassium uptake protein trk...    33   9.8  

>UniRef50_Q894B2 Cluster: Trk system potassium uptake protein trkA;
           n=6; Clostridium|Rep: Trk system potassium uptake
           protein trkA - Clostridium tetani
          Length = 478

 Score = 32.7 bits (71), Expect = 9.8
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
 Frame = +2

Query: 533 YLLK*IPVYIIINYKTLKKDISSSQIILCKERIDLV-----MSLS-VSFSTYTFYLITLM 694
           YL+K IP  ++  Y  +KK ISSS I+  +  + +V      SL  +  STY+ ++IT +
Sbjct: 317 YLVKLIPSLLLSKYFGIKKAISSSFILSTQLSLIIVGSQIAYSLDLIDSSTYSLFIITTI 376

Query: 695 F*CL 706
             CL
Sbjct: 377 ISCL 380


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,197,857
Number of Sequences: 1657284
Number of extensions: 13381676
Number of successful extensions: 29467
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 28558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29462
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)