Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0158
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    25   0.84 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.0  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 172 IHYEFFKNYEILRNVLFGLTATNTILKH 89
           ++Y F K    LR VL  L     ILKH
Sbjct: 47  LNYNFTKKCYFLRMVLIDLLIVGCILKH 74


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 113  C*TEQNVPENFIVFKKLIM 169
            C TEQ+VPE  I  K L+M
Sbjct: 1194 CQTEQDVPEAPIAVKALVM 1212


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 180  FCLQSPLISVLRRRPQSVSY*RYHVVKWL*YPSGY 284
            FC+ +  I      PQ  +  +Y V+ ++  PS Y
Sbjct: 982  FCMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMY 1016


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 180  FCLQSPLISVLRRRPQSVSY*RYHVVKWL*YPSGY 284
            FC+ +  I      PQ  +  +Y V+ ++  PS Y
Sbjct: 982  FCMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMY 1016


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,375
Number of Sequences: 336
Number of extensions: 3692
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)