Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0158
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15442| Best HMM Match : rve (HMM E-Value=0.00084)                   29   3.0  
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_45193| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)                  29   5.3  
SB_56764| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)                28   9.2  
SB_9788| Best HMM Match : Seryl_tRNA_N (HMM E-Value=4.9)               28   9.2  

>SB_15442| Best HMM Match : rve (HMM E-Value=0.00084)
          Length = 822

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 349 NILTSRTRNA-PFPRPKSRKWTSYPLGYHSHFTTW 248
           N + S+TR+A P+P+       ++  GYH + T W
Sbjct: 676 NYVESKTRSALPYPKTHKSDPVAFIRGYHEYMTEW 710


>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1226

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 566 INYKTLKKDISSSQIILCKE-RIDLVMSLSVSFSTYTFYL 682
           INY+   K     Q++L K+   +++ SLS  F+ YTFY+
Sbjct: 500 INYQPADKSSKELQVVLAKDFTSEVIRSLS-GFTKYTFYV 538


>SB_45193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 457 LMNTIDTPDITQHENLSNYDVIVHNL*LFLEGSRILNILTSRTRNA-PFPRPKSRKWTSY 281
           L   IDT D  +     N  V   N+      + I + + S+TR+A P+P+       ++
Sbjct: 174 LAGYIDTADEDKGNAYGNDGVTDRNV----RDTNIEDDVESKTRSALPYPKTHKSDPVAF 229

Query: 280 PLGYHSHFTTW 248
             GYH + T W
Sbjct: 230 IRGYHEYMTEW 240


>SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)
          Length = 460

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 179 ILSSITINIGFTTKAAERVVLTIPCCKVAVISKWI 283
           ++SS+TIN  F T  A  +   I   K  +  KWI
Sbjct: 105 VISSVTINASFLTLLALAIAQLISLYKPQIYEKWI 139


>SB_56764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 125 VRSNSNEYNTETQSCVHNF***SATRKNLDFVFTCSPGDPL 3
           V+ N+ +YN+      H       T K+L    +CSPGDPL
Sbjct: 76  VKENTFQYNSREVLISHR-----QTNKSLKISNSCSPGDPL 111


>SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
          Length = 1227

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 466 VIY*MKLTQIQRQKLGHLTAFNLSVEVDTSIYYY*LQNLKKRYKQFTDNTL 618
           V+Y   L++    ++   T   + VE D +  YY ++NL+  Y+   DN L
Sbjct: 314 VLYPRALSEALLFEITLATVDQVVVESDATKLYYGIKNLELEYESLRDNNL 364


>SB_9788| Best HMM Match : Seryl_tRNA_N (HMM E-Value=4.9)
          Length = 149

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 125 QNVPENFIVFKKLIMYFIILSSITINIGFTTKAAERVVLTIPCCK 259
           Q VP+   V K +I + +  +   IN+G TT A     + IPC K
Sbjct: 4   QRVPKEVFVSKYIIEFGMYDAIAHINMGATTVAKVYKAVDIPCGK 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,173,265
Number of Sequences: 59808
Number of extensions: 427261
Number of successful extensions: 2371
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2371
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)