Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0158
         (745 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ141696-1|AAZ73087.1|  674|Homo sapiens NDC1 protein.                 31   3.3  
BC003082-1|AAH03082.1|  674|Homo sapiens transmembrane protein 4...    31   3.3  
AL354612-1|CAB89725.1|  542|Homo sapiens hypothetical protein pr...    31   3.3  
AL049745-2|CAI22180.1|  674|Homo sapiens transmembrane protein 4...    31   3.3  
AK001269-1|BAA91592.1|  674|Homo sapiens protein ( Homo sapiens ...    31   3.3  

>DQ141696-1|AAZ73087.1|  674|Homo sapiens NDC1 protein.
          Length = 674

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 161 LIMYFIILSSITINIGFTTKAAERVVLTIPCCKVAVISKWI 283
           +I YF++LS + I I         VV +IPC ++A+I K I
Sbjct: 70  VIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKII 110


>BC003082-1|AAH03082.1|  674|Homo sapiens transmembrane protein 48
           protein.
          Length = 674

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 161 LIMYFIILSSITINIGFTTKAAERVVLTIPCCKVAVISKWI 283
           +I YF++LS + I I         VV +IPC ++A+I K I
Sbjct: 70  VIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKII 110


>AL354612-1|CAB89725.1|  542|Homo sapiens hypothetical protein
           protein.
          Length = 542

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 161 LIMYFIILSSITINIGFTTKAAERVVLTIPCCKVAVISKWI 283
           +I YF++LS + I I         VV +IPC ++A+I K I
Sbjct: 70  VIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKII 110


>AL049745-2|CAI22180.1|  674|Homo sapiens transmembrane protein 48
           protein.
          Length = 674

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 161 LIMYFIILSSITINIGFTTKAAERVVLTIPCCKVAVISKWI 283
           +I YF++LS + I I         VV +IPC ++A+I K I
Sbjct: 70  VIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKII 110


>AK001269-1|BAA91592.1|  674|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10407 fis, clone NT2RM4000520. ).
          Length = 674

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 161 LIMYFIILSSITINIGFTTKAAERVVLTIPCCKVAVISKWI 283
           +I YF++LS + I I         VV +IPC ++A+I K I
Sbjct: 70  VIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKII 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,307,173
Number of Sequences: 237096
Number of extensions: 1988010
Number of successful extensions: 6820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6820
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)