Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0158
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78019-7|CAB01454.2|  547|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z73971-9|CAH04730.1|  522|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AY532645-1|AAS21318.1|  522|Caenorhabditis elegans egg laying de...    30   1.5  
U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical p...    29   3.5  
U23455-2|AAC46534.1|  423|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z83128-3|CAB05637.1|  415|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF273810-1|AAG15159.1|  150|Caenorhabditis elegans nuclear recep...    28   6.1  
AF273809-1|AAG15158.1|  418|Caenorhabditis elegans nuclear recep...    28   6.1  

>Z78019-7|CAB01454.2|  547|Caenorhabditis elegans Hypothetical
           protein ZK863.3 protein.
          Length = 547

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 238 INDTML*SGCDIQVDMMSTYEILASETGRFGFSMSICSIFGSLQEKVTNYER*RHNLKDF 417
           +ND +L     +++ + STYE +A +T R     S+C  F     K T Y+   H + D 
Sbjct: 228 LNDMLLYGCTRLEIGVQSTYEDVARDTNRGHTVKSVCETFH--MAKDTGYKVVIHMMPDL 285

Query: 418 -HVGLCR 435
            +VGL R
Sbjct: 286 PNVGLER 292


>Z73971-9|CAH04730.1|  522|Caenorhabditis elegans Hypothetical
           protein C50H2.2a protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 508 VFVVVFELISFNKSHSKLMNTIDTPDI 428
           VFV+V   I F KSH +L+ TID  D+
Sbjct: 196 VFVIVLSAIKF-KSHQRLLKTIDMVDV 221


>Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical
           protein C50H2.2b protein.
          Length = 488

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 508 VFVVVFELISFNKSHSKLMNTIDTPDI 428
           VFV+V   I F KSH +L+ TID  D+
Sbjct: 162 VFVIVLSAIKF-KSHQRLLKTIDMVDV 187


>AY532645-1|AAS21318.1|  522|Caenorhabditis elegans egg laying
           defective EGL-47A protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 508 VFVVVFELISFNKSHSKLMNTIDTPDI 428
           VFV+V   I F KSH +L+ TID  D+
Sbjct: 196 VFVIVLSAIKF-KSHQRLLKTIDMVDV 221


>U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical
           protein C18C4.9 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 160 FFKNYEILRNVLFGL--TATNTILKHSLVFTIFNDD 59
           FFKN EI + ++FG        + KH+ +FT+  DD
Sbjct: 229 FFKNPEIRQMIMFGTKNEGHERLKKHAQLFTVLMDD 264


>U23455-2|AAC46534.1|  423|Caenorhabditis elegans Hypothetical
           protein F55E10.5 protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +2

Query: 107 RCC*TEQNVPENFIVFKKLIMYFIILSSITINI 205
           +CC   +NV  +F +  + + Y  ++++IT+N+
Sbjct: 28  KCCKKHKNVDRHFDILSEFLTYKYVVNAITLNL 60


>Z83128-3|CAB05637.1|  415|Caenorhabditis elegans Hypothetical
           protein W01D2.2b protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 308 PRKRGVSGSRCQYVQYSGAFKKKLQ 382
           P+  G  G R +YV YSG  +K L+
Sbjct: 277 PKSEGKHGVRIEYVDYSGVSQKSLE 301


>AF273810-1|AAG15159.1|  150|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 150

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 308 PRKRGVSGSRCQYVQYSGAFKKKLQ 382
           P+  G  G R +YV YSG  +K L+
Sbjct: 12  PKSEGKHGVRIEYVDYSGVSQKSLE 36


>AF273809-1|AAG15158.1|  418|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 308 PRKRGVSGSRCQYVQYSGAFKKKLQ 382
           P+  G  G R +YV YSG  +K L+
Sbjct: 280 PKSEGKHGVRIEYVDYSGVSQKSLE 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,859
Number of Sequences: 27780
Number of extensions: 338241
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)