Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0158
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 113  C*TEQNVPENFIVFKKLIM 169
            C TEQ+ PE  I  K L+M
Sbjct: 1173 CQTEQDAPEAPIAIKALVM 1191


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 238  YDTLCGLRRKTDINGD*RQNDKIHYEFFKNYEILRNVLFGLTATNTILK 92
            Y   CG   + D+NG  RQ+ ++  E      I+++ +  +   N IL+
Sbjct: 1275 YGKNCGKGERIDMNGKLRQSPRLK-ELVGATSIIKDCVEDMKRGNKILR 1322


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +1

Query: 271 IQVDMMSTYEILASETG------RFGFSMSICSIFGSLQEKVTNYER 393
           + V  ++T+ +LA+ T       RFG  +S  +++G+L  K     R
Sbjct: 561 VLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALLTKTNRIAR 607


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +1

Query: 271 IQVDMMSTYEILASETG------RFGFSMSICSIFGSLQEKVTNYER 393
           + V  ++T+ +LA+ T       RFG  +S  +++G+L  K     R
Sbjct: 651 VLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALLTKTNRIAR 697


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -1

Query: 295 KWTSYPLGYHSHFTTW 248
           +WT YP G  ++   W
Sbjct: 27  EWTKYPFGAEANTPGW 42


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 262 HFTTWYR*YDTLCGLRRKTDI 200
           HF TWY+    L G  R++++
Sbjct: 363 HFITWYKDGRQLPGTGRQSEL 383


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 262 HFTTWYR*YDTLCGLRRKTDI 200
           HF TWY+    L G  R++++
Sbjct: 363 HFITWYKDGRQLPGTGRQSEL 383


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 232 TLCGLRRKTDINGD 191
           T C + RKT+++GD
Sbjct: 717 TTCNMFRKTNLSGD 730


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,513
Number of Sequences: 438
Number of extensions: 4437
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)