Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0157
         (511 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    42   0.006
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    39   0.057
UniRef50_A4WFR4 Cluster: AMP-dependent synthetase and ligase; n=...    33   3.8  
UniRef50_P08782 Cluster: Virulence plasmid protein pGP2-D; n=10;...    32   6.6  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 42.3 bits (95), Expect = 0.006
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +2

Query: 272 WWYLPARTHKRSYHQ*LC 325
           WWYLPARTHKRSYH+  C
Sbjct: 571 WWYLPARTHKRSYHRYQC 588


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.1 bits (87), Expect = 0.057
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +1

Query: 79  YLLLRLVDEFTAHLVLSGYRSP 144
           +LLLR VDE TAHLVLSGY SP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A4WFR4 Cluster: AMP-dependent synthetase and ligase; n=6;
           Enterobacteriaceae|Rep: AMP-dependent synthetase and
           ligase - Enterobacter sp. 638
          Length = 453

 Score = 33.1 bits (72), Expect = 3.8
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = -1

Query: 328 FA*LLVVGPLVSPRG*VPPPAYFCREAVM---RFGLK-GGAIVVTILRP*NLYLKVGVTF 161
           F  L   G   SPR  V P A   REAVM   RFG +  G  VV  + P +LY   G+TF
Sbjct: 134 FVELFTSGSTGSPRRIVKPIASLDREAVMLATRFGERLNGCRVVASVVPQHLY---GLTF 190

Query: 160 TMYMSMGSG 134
            +++ M  G
Sbjct: 191 RIFLPMSLG 199


>UniRef50_P08782 Cluster: Virulence plasmid protein pGP2-D; n=10;
           root|Rep: Virulence plasmid protein pGP2-D - Chlamydia
           trachomatis
          Length = 354

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 281 GTTTCLFLP*SSNAFRFEGWGNRCNYTETLEFISQGGCHIY 159
           G T  + L   SN+F+FEGW  R  +T+T EF+   G   Y
Sbjct: 70  GNTKGVVLSRESNSFQFEGWIPRIRFTKT-EFLEAYGVKRY 109


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,583,195
Number of Sequences: 1657284
Number of extensions: 10369330
Number of successful extensions: 18883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18881
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)