Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0157
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0634 + 4656888-4657112,4657458-4658171                           27   6.6  

>03_01_0634 + 4656888-4657112,4657458-4658171
          Length = 312

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 22/80 (27%), Positives = 39/80 (48%)
 Frame = +1

Query: 223 HPSNRNALLLHGRNRQVVVPTRADSQEVLPPVIMQIII*RILFLLHDVILSQ*KSIVNIV 402
           +PSN NA+++  ++     P  A+++ +   + MQI   R L L   + LS    IVN V
Sbjct: 160 NPSNHNAIVIKAQSLNAGTPLLAEAEGLF--LAMQIA--RHLQLQDPIFLSDNSEIVNAV 215

Query: 403 EYVFH*KNWYPPEIAPVFDR 462
           +   + +N     + P+  R
Sbjct: 216 QNEDYIQNPGHWSLRPIISR 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,407,551
Number of Sequences: 37544
Number of extensions: 290001
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)