Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0157
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            27   6.8  
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)              27   6.8  

>SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 228 FKPKRITASRQK*AGGGTYPRGLTRGPTTSNYANYNLADFI 350
           FK + + A   +  GGG+YP  L R P+ ++   Y+L  F+
Sbjct: 529 FKTRAVEAVFYRVGGGGSYPTPLNRVPSLADC--YDLVPFV 567


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 197 SQYSYNDCPTLQTETHYCFTAEIGRWWYLPART 295
           S+   N C   +T+ ++C T++I   WY P +T
Sbjct: 185 SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 217



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 230 QTETHYCFTAEIGRWWYLPARTHKRSYH 313
           +T+ + C   +I   WY P++T    YH
Sbjct: 90  ETQAYLCHPTKIQANWYHPSKTQANLYH 117



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 230 QTETHYCFTAEIGRWWYLPARTHKRSYH 313
           +T+ + C   +I   WY P++T    YH
Sbjct: 622 ETQAYLCHPTKIQANWYHPSKTQANLYH 649


>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
          Length = 180

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 197 SQYSYNDCPTLQTETHYCFTAEIGRWWYLPART 295
           S+   N C   +T+ ++C T++I   WY P +T
Sbjct: 30  SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,428,407
Number of Sequences: 59808
Number of extensions: 331300
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)