Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0157
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06620.1 68416.m00769 protein kinase family protein contains ...    30   0.79 
At3g51550.1 68416.m05645 protein kinase family protein contains ...    28   4.2  
At3g04440.1 68416.m00470 expressed protein contains Pfam domain,...    27   5.5  
At3g03700.1 68416.m00373 expressed protein contains Pfam domain,...    27   5.5  

>At3g06620.1 68416.m00769 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 773

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 487 RCIRVERCTGRIPVQSQAGTNFS 419
           RC+R E  TG  PV+S++G  FS
Sbjct: 167 RCVRGESWTGEFPVKSKSGDRFS 189


>At3g51550.1 68416.m05645 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 895

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +3

Query: 195 GLSIVTTIAPPFKPKRITASRQK*AGGGTYPRGLTRGPTTSNYANYNLADFIFITRCYSF 374
           GL I  T  P    K  T +    A    Y    + GPT     NYNL     I   +++
Sbjct: 259 GLGIPETADPNMTIKYPTGTPTYVAPVDVYSTARSMGPTAQINLNYNLTWIFSIDSGFTY 318

Query: 375 TVKVNREYC*VRISLEKL 428
            V+++  +C V  ++ K+
Sbjct: 319 LVRLH--FCEVSSNITKI 334


>At3g04440.1 68416.m00470 expressed protein contains Pfam domain,
           PF04515: Protein of unknown function, DUF580
          Length = 482

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 364 VILSQ*KSIVNIVEYVFH*KNWYPPEIAPV 453
           VI+   + +++   + FH K WYPP +A V
Sbjct: 72  VIVLTIRGLISASTHHFHLKKWYPPLLASV 101


>At3g03700.1 68416.m00373 expressed protein contains Pfam domain,
           PF04515: Protein of unknown function, DUF580
          Length = 482

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 364 VILSQ*KSIVNIVEYVFH*KNWYPPEIAPV 453
           VI+   + +++   + FH K WYPP +A V
Sbjct: 72  VIVLTIRGLISASTHHFHLKKWYPPLLASV 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,231,627
Number of Sequences: 28952
Number of extensions: 226585
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)