Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0155
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    27   2.6  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    27   2.6  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    26   6.0  

>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
 Frame = +1

Query: 364 TLPNTVKI*YPLKNTAICILIQMSQEILIENNNSSIDETITRHHITIGTQT-----SNIL 528
           ++P  +K+  P K     + I ++   LI  +   I + +     ++   T     +++L
Sbjct: 91  SIPALIKVVTPTKEEDASLNINLAVSSLILGSKVLIHQNLIPSLFSVSNSTKLLYSASLL 150

Query: 529 RLFSTELLLVDDETMQYYTGLETASKFSLVLITFLPMANDIRYRWSRVVGI 681
              S  L+ ++   +     +ET  K+ L  I+F+P  + + Y      GI
Sbjct: 151 PRSSERLVTLETNEIDASVVIETLLKYILSRISFIPRVSVVPYIPDAAYGI 201


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 297 ETKSREQRLQTRNLKKQLFSLPNTSQHCEDIVPLEEHSNM 416
           E  S E +LQ   +K+QL  L       EDI   EE++NM
Sbjct: 100 EIMSLESQLQ--KMKEQLLQLEERENTSEDICQSEENANM 137


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 153 SSRLCRKHFVKSDYENISKYTGVKH*-HKYLKKGAVPSIFSWNMKPVSEETKS 308
           S+    +  V S+ +  SK  G KH  H   KKG    +F + +   ++ TKS
Sbjct: 479 STAATNEESVVSNEDRTSKKAGKKHHRHHKKKKGGNKRVFGFKLHKYAKPTKS 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,577
Number of Sequences: 5004
Number of extensions: 59222
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)