Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0155
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0541 - 11339269-11339376,11339511-11339580,11339679-113398...    30   1.6  
02_05_0072 - 25598690-25598702,25598820-25599001,25599111-255992...    29   4.8  
06_02_0152 - 12316242-12316248,12316634-12316800,12317689-123178...    28   6.3  

>02_02_0541 -
           11339269-11339376,11339511-11339580,11339679-11339869,
           11341063-11341158,11342444-11342550,11343468-11343510,
           11343591-11343680,11343943-11344005
          Length = 255

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 490 HHITIGTQTSNILRLFSTELLLVDDETMQY 579
           H++TIG++ S  +  F TE ++VDD  + Y
Sbjct: 122 HNMTIGSELSKTVATFITEKIVVDDAGLAY 151


>02_05_0072 -
           25598690-25598702,25598820-25599001,25599111-25599269,
           25599450-25599753,25600176-25600332,25600439-25600484
          Length = 286

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 273 WNMKPVSEETKSREQRLQTRNLKKQLFSLPNTSQHCEDIVPLEEHSNMHFD 425
           + ++ + +E +  ++ LQ    K     LP T++H E + P + H N  F+
Sbjct: 92  YTVREIVQELEYNQRMLQLDQSKAA--ELPETAEHSEHLKPKDVHGNAQFN 140


>06_02_0152 -
           12316242-12316248,12316634-12316800,12317689-12317800,
           12317930-12317999,12318535-12318535,12318791-12319144
          Length = 236

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
 Frame = +1

Query: 364 TLPNTVKI*YPLKNTAICILIQMSQEILIENNNSSIDETITRHHITIGTQTSNILRLFST 543
           T+P + ++ +  + T  CI+  ++ ++L+ N   +ID+ + +  +  G     I+R F  
Sbjct: 136 TVPISSRLYFECQQTYSCIMADITNKLLLPNYRRTIDDKLFQRKVPGG-----IMRGFF- 189

Query: 544 ELLLVDDETMQYYTGLE-TASKFSLVLITFLPMANDIRY 657
            L+++       Y G E    KF    I  L +  +++Y
Sbjct: 190 -LMVLSSRRHFSYAGFEQQPKKFVSPKIRLLNIEQELKY 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,514,987
Number of Sequences: 37544
Number of extensions: 309432
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)