Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0155
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   45   5e-05
SB_55298| Best HMM Match : THAP (HMM E-Value=2.4e-11)                  43   2e-04
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  31   0.69 
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_30362| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_57961| Best HMM Match : Ion_trans (HMM E-Value=2.5e-38)             29   2.8  
SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_35565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_3736| Best HMM Match : THAP (HMM E-Value=0.00025)                   29   3.7  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    29   3.7  
SB_12627| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_18807| Best HMM Match : Transketolase_N (HMM E-Value=2.9)           28   6.4  
SB_1701| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_16287| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15)                 28   8.5  
SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
 Frame = +3

Query: 84  PKDKKIGRLWLKAI*REKSTPTKSS---RLCRKHFVKSDYENISKYTGVKH*HKYLKKGA 254
           P D++I + WL  I R++    K S   R+C +HF + DY  +    G     + LK+G+
Sbjct: 262 PSDEEIRKKWLVKIRRDEGPSFKISSGTRVCSRHFSEEDYLALDN-AG----QRMLKRGS 316

Query: 255 VPSIFSWNMKPVS 293
           VPSIF W+ +P S
Sbjct: 317 VPSIFDWSSQPKS 329


>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
 Frame = +3

Query: 90  DKKIGRLWLKAI*REKSTPTKSS---RLCRKHFVKSDYENISKYTGVKH*HKYLKKGAVP 260
           D++I + WL  I R +    K S   R+C +HF++ DY       G     + LK+G+VP
Sbjct: 48  DEEIRKKWLVKIRRNEGPSFKISSGTRVCSRHFIEEDYLAPDN-AG----RRMLKRGSVP 102

Query: 261 SIFSWNMKPVSEETKSREQRLQTRNLKKQ 347
           SIF W+ +P S     R     T+ ++ +
Sbjct: 103 SIFDWSSQPKSRRKIVRHTDSDTQTVESE 131


>SB_55298| Best HMM Match : THAP (HMM E-Value=2.4e-11)
          Length = 273

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 81  FPKDKKIGRLWLKAI*REKSTP--TKSSRLCRKHFVKSDYENISKYTGVKH*HKYLKKGA 254
           FPK+ +  R WL  I         TK SR+C KHF  SDY+ +    G     + L+  A
Sbjct: 23  FPKNAERKRQWLHIISEGAGEVEFTKKSRVCWKHFTDSDYKEVRDSRGRLVQDRVLRNDA 82

Query: 255 VPSIFSWNMKPVSEET 302
            P +FS + K    +T
Sbjct: 83  CPRVFSSSRKKRERDT 98


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
 Frame = +1

Query: 310 ENKGYKLVTLKNNFLACPTLPNTVKI*YPLK--NTAICILIQMSQEILIENN-NSSIDET 480
           +N    L+T ++N    P + N       LK  N A       S   LI N   + I  T
Sbjct: 277 KNYATMLITDQSNLSWFPEIVNVFIDKNMLKHINAAQTDSFYSSVSTLISNQLKNIITRT 336

Query: 481 ITRHHITIGTQTSNILRLFSTELLLVDDETMQYYTGL 591
           I            N L +F  EL+L DD+ MQ+Y  L
Sbjct: 337 IEAWESLFKESNRNKLPMFKMELILDDDDNMQFYPAL 373


>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
 Frame = +3

Query: 72  VNQFPKDKKIGRLWLKAI*REKSTPTKSSR-----LCRKHFVKSDYENISKYTGVKH*HK 236
           ++ FPKD+K+   W K +   K  P   +R     LC  HF K  Y+      G    ++
Sbjct: 104 MHNFPKDRKLRHEWEKFV--RKHRPDFRARGDNISLCSDHFKKECYDXPKLNVGNLKFNR 161

Query: 237 YLKKGAVPSIFSWNMKPVSEETKSREQRLQTRNLKKQLFSLP 362
            L  G++P+      K   EE  +        ++ K LF++P
Sbjct: 162 RLIPGSIPT--EDGCKKTEEEPSAH----YVDDISKVLFTVP 197


>SB_30362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +3

Query: 162 LCRKHFVKSDYENISKYTGVKH*HKYLKKGAVPSIFSWNMKPVSEETKSREQRLQTRNLK 341
           +C  HF +  Y +  + + +K   +YL KG+VP+I  W  K        RE R + ++ +
Sbjct: 53  VCSDHFERECY-HFGEGSELK---RYLIKGSVPTI--WKPKKTIASPSDRELRQRAKH-R 105

Query: 342 KQLFSLPNTSQHCE--DIVPLEEHSNM 416
              F   N S+  E  ++V L+ H  +
Sbjct: 106 HSSFVTNNLSEQFEHLNLVKLDHHEQL 132


>SB_57961| Best HMM Match : Ion_trans (HMM E-Value=2.5e-38)
          Length = 381

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -2

Query: 395 GYYIFTVLGSVGQAKKLFFKVTSL*PLFSTFCFFRNWFHIP*KY--RWYSTFLQIFMLMF 222
           GYYIF      G  K      T++  LF TF     W  I      R YS +  I  +  
Sbjct: 168 GYYIFGYEADTGDKKNWGNLSTAMLTLF-TFVTVDGWTEIQKDLDMRPYSQWFTITFIFL 226

Query: 221 DTCVFTNVFI 192
              +FTN+FI
Sbjct: 227 GHFIFTNLFI 236


>SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 526 LRLFSTELLLVDDETMQYYTGLET 597
           + L S+E+++ DD+  +Y+TGL T
Sbjct: 232 VNLMSSEIIIADDKKCKYFTGLHT 255


>SB_35565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 526 LRLFSTELLLVDDETMQYYTGLET 597
           + L S+E+++ DD+  +Y+TGL T
Sbjct: 232 VNLMSSEIIIADDKKCKYFTGLHT 255


>SB_3736| Best HMM Match : THAP (HMM E-Value=0.00025)
          Length = 429

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
 Frame = +3

Query: 111 WLKAI*RE-KSTPTKSSRLCRKHFVKS------DYENISKYTGVKH*HKYLKKGAVPSIF 269
           WL+ +  + +   +K +R+C  HF+K       D +NI +   +K  H+ +KK +  +I 
Sbjct: 126 WLRNLPLKFRGAESKHARVCSDHFLKGFPNKLYDDQNIDRAPTIKLGHQKVKKISEETIL 185

Query: 270 SWNMKPVSEETKSR 311
                   EET+ R
Sbjct: 186 RRERAKSREETRKR 199


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 279  MKPVSEETKSREQRLQT--RNLKKQLFSLPNTSQHCEDIVPLEEH 407
            +KPVSE T+ ++ +++T  +N +K+L +L  T +  E+ +    H
Sbjct: 1738 LKPVSEATQKKKGQVETELQNARKRLATLETTERKSEEELAKANH 1782


>SB_12627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 294 EETKSREQRLQTRNLKKQLFSLPNTSQHCEDIVPLEEHSN 413
           +E +  ++ LQ   LKKQ      T  H E +VP E+H N
Sbjct: 266 QEREKIKRELQLEALKKQAIMQGRTRSHSE-LVPQEDHQN 304


>SB_18807| Best HMM Match : Transketolase_N (HMM E-Value=2.9)
          Length = 256

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 181 TKCLRHNLELFVGVLFSRQMAF-NHSLPIFLSFGN 80
           T   R  + + +GVLF   +A  N SLPI L FGN
Sbjct: 32  TALARTMIAIILGVLFGAFLAIINDSLPIPLGFGN 66


>SB_1701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +3

Query: 72  VNQFPKDKKIGRLWLKAI*REKSTPTKSSR-----LCRKHFVKSDYE 197
           ++ FPKD K+   W K +   K+ P   +R     LC  HF K  Y+
Sbjct: 45  MHNFPKDSKLKHEWEKFV--RKNRPDSRARGDNISLCSDHFKKECYD 89


>SB_16287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 432 HLNQNAYCCVLQGVLYLHSVGKCWAG*KVVF 340
           HL  +A+C  L+G  Y   +G+ + G KV F
Sbjct: 45  HLFSDAFCASLKGKQYTLEIGESFHGYKVTF 75


>SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15)
          Length = 987

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 108 LWLKAI*REKSTPTKSSR--LCRKHFVKSDYENISKYTGVKH*HKYLKKGAVPSIFSWNM 281
           LW+  I   K       R  +C  HF    Y+   + +G+K   +YL KG+VP+I  W  
Sbjct: 33  LWICKIALRKGRENPLGRFVVCSDHFESECYQ-FGEGSGLK---RYLIKGSVPTI--WKP 86

Query: 282 KPVSEETKSREQRLQTR 332
           +        RE R + +
Sbjct: 87  RKTIASPSDRELRQRAK 103


>SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 75   NQFPKDKKIGRLWLKAI*REKSTPTKSSRLCRKHFVKSDYENISKYT 215
            N++PKD    ++ LKAI         +S L + +FV SD ENI  YT
Sbjct: 934  NKYPKDLA-AQVTLKAI-SNYFVSAMASSLKQIYFVLSDPENIGMYT 978


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,289,424
Number of Sequences: 59808
Number of extensions: 407473
Number of successful extensions: 990
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)