Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0155
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z81074-10|CAB03036.1|  278|Caenorhabditis elegans Hypothetical p...    30   1.4  
AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U80027-11|AAC48117.2|  106|Caenorhabditis elegans Hypothetical p...    28   7.5  
AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical ...    28   7.5  
AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    28   7.5  

>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 20  YF-KHNDALFCANMLRNLSKSIPEGQENWKTVVKGHL 127
           YF K +++ FC + L+N+++SI E ++N+K  +   L
Sbjct: 8   YFRKRSNSKFCGSFLQNVTESIRENEQNYKKTINNKL 44


>Z81074-10|CAB03036.1|  278|Caenorhabditis elegans Hypothetical
           protein F32B6.5 protein.
          Length = 278

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 334 TLKNNFLACPTLPNTVKI*YPLKNTAICILIQMSQEILIENNNSSIDET 480
           T  N   +CP +P T ++   +K +  C L+ +  + LIE   S +  T
Sbjct: 43  TALNKVQSCPVVPTTARVTAEIKKSISCPLLALQADQLIEVTVSPVPTT 91


>AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical
           protein B0281.8 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 282 KPVSEETKSREQRLQTRNLKKQLFSLPNTSQHCEDIVPLEEHSNM 416
           K + +ET +   R+Q  N +K  + +   ++H +DI  +E+  NM
Sbjct: 203 KGIIDETTAEATRIQKFNNEKITYLIDLQARHVKDIEAIEKQKNM 247


>Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical
           protein ZK1251.8 protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 284 FHIP*KYRWYSTFLQIFMLMFDTCVFT 204
           FHIP KY+W ST      L+    V+T
Sbjct: 5   FHIPEKYQWASTLFVHVALIAGVAVYT 31


>U80027-11|AAC48117.2|  106|Caenorhabditis elegans Hypothetical
           protein T28A11.6 protein.
          Length = 106

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 547 LLLVDDETMQYYTGLETASKFSLVLITFLPMANDIRYRWSRVVGISIEHQ 696
           LLL +  + Q     +T +K + VLI  L +A+ I +  S VVG + EH+
Sbjct: 14  LLLGNSNSSQQKDNWKTIAKIATVLIGILFVASPIVFGVSGVVGKNNEHK 63


>AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical
           protein W03G9.7 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
 Frame = +3

Query: 84  PKDKKIGRLWLKAI*REKSTPT-KSSRLCRKHFVKSDYENISKYTGVKH*HKYLKKGAVP 260
           PK K  G+   K     +S    K  +L     V  DY NI K          LKK    
Sbjct: 44  PKQKGTGKRNAKVTPSNESDAVPKGGKLKLTEGVVQDYINIEKAINRLERKNVLKKFESQ 103

Query: 261 SIFSWNMKPVSEETKS--REQRLQTRNLKKQLFSLPNTS 371
           +I++ N+K   E+ ++  +E + QT   K  L ++   S
Sbjct: 104 TIYADNLKNTVEQLEAVLKELKKQTEREKTDLKNIEQPS 142


>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 165 ITSNFLWEYFFRVKWPLTTVFQFSCP 88
           ++++ + +Y   + WPL+ +F  SCP
Sbjct: 101 MSTDVIVDYLGNIHWPLSAIFTSSCP 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,580,165
Number of Sequences: 27780
Number of extensions: 329097
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)