Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0155
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46590.1 68416.m05057 telomere repeat-binding protein, putati...    29   2.3  
At2g35190.1 68415.m04316 novel plant SNARE 11 (NPSN11) contains ...    28   5.2  
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m...    28   6.9  
At5g28530.1 68418.m03478 far-red impaired responsive protein, pu...    27   9.2  
At5g13390.1 68418.m01542 expressed protein                             27   9.2  
At2g40095.1 68415.m04928 expressed protein                             27   9.2  
At1g57580.1 68414.m06534 F-box family protein contains Pfam:PF00...    27   9.2  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    27   9.2  

>At3g46590.1 68416.m05057 telomere repeat-binding protein, putative
           similar to telomere repeat-binding protein TRP1
           [Arabidopsis thaliana] gi|5459298|emb|CAB50690
          Length = 552

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +1

Query: 319 GYKLVTLKNNFLACPTLPNTVKI*YPLKNTAICILIQMSQEILIENNNSSIDETITR-HH 495
           G  L+  K+   AC  + NTVK  YP     +  +       L +N        IT  +H
Sbjct: 52  GSLLLESKSPVNACLVVQNTVKNEYPADENPVKAVPYSESPSLFDNGKCGFSSVITNPNH 111

Query: 496 ITIGTQTSNILRLFST 543
           + +G +    +  FS+
Sbjct: 112 LLVGDKVGKEVEGFSS 127


>At2g35190.1 68415.m04316 novel plant SNARE 11 (NPSN11) contains 1
           transmembrane domain; identical to Novel plant SNARE 11
           (AtNPSN11) (Swiss-Prot:Q944A9) [Arabidopsis thaliana]
          Length = 265

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
 Frame = +1

Query: 412 ICILIQMSQEILIENNNSSIDET---------ITRHHITIGTQTSNILRLFSTELLLVDD 564
           + +   MS + L++  NS +D+T         I +  I +GT TS  L+  + ++  V +
Sbjct: 128 VLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMSRVVN 187

Query: 565 ETMQYYTGLETASK 606
           E    +  L+ ASK
Sbjct: 188 ELDSIHFSLKKASK 201


>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
           myosin heavy chain (GI:4249703) [Rana catesbeiana];
           similar to smooth muscle myosin heavy chain SM2
           (GI:2352945) [Homo sapiens]
          Length = 476

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 424 IQMSQEILIENNNSSIDETITRHHITIGTQTSNILRLFSTELLLVDDETMQYYTGLETAS 603
           I ++++I +E+ N  I    TR  +    +    L  F T+   + D   + YTG ETA 
Sbjct: 283 IHVAEQIHLESKNEYIK---TRDMLKENKENRESLMFFETQFNKMKDALEKGYTGSETAM 339

Query: 604 K 606
           K
Sbjct: 340 K 340


>At5g28530.1 68418.m03478 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 685

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +1

Query: 442 ILIENNNSSIDETITRHHITIGTQTSNILRLFSTELLLVDDETMQYYTGLETASKFSL 615
           I +E + S+I ++      T  +Q   +   +  ++   DDE  +YY+     S FS+
Sbjct: 25  IRLEEDESTITKSEIESTPTPTSQYDTVFTPYVGQIFTTDDEAFEYYSTFARKSGFSI 82


>At5g13390.1 68418.m01542 expressed protein 
          Length = 1123

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 367 VLGRLKSCFLRLRVCNLCSLLFVSSETGFIF 275
           +LG+L+SCFL L +  +  L  V+S    IF
Sbjct: 247 ILGQLESCFLSLNLMFMPLLFHVASHYSVIF 277


>At2g40095.1 68415.m04928 expressed protein
          Length = 209

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 328 VCNLCSLLFVSSETGFIFHENI--DGTAPFFR 239
           +C++ SL++VS +  F+F E    DG   +FR
Sbjct: 115 ICSISSLIYVSLKAAFVFGEPAIGDGGGNYFR 146


>At1g57580.1 68414.m06534 F-box family protein contains Pfam:PF00646
           F-box domain; contains TIGRFAM TIGR01640 : F-box protein
           interaction domain
          Length = 346

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -1

Query: 252 HLSSDIYVNV*H--LCIY*CFHSQISQSVYDITSNFLWEYFFRVKWPLTTVFQFSCP 88
           HL  +I   + H  L +  C +  + QS    T NF  EYF R++  L  +    CP
Sbjct: 7   HLLDEILFRIDHRSLAMIQCTNRSL-QSHISKTPNFASEYFSRIRSSLLYIATHGCP 62


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
            Pfam PF04054: CCR4-Not complex component, Not1; contains
            TIGRFAM TIGR01612: reticulocyte binding protein; similar
            to General negative regulator of transcription subunit 1
            (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
            gb|T44328 and gb|AA395265
          Length = 2378

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 27/96 (28%), Positives = 37/96 (38%)
 Frame = +1

Query: 340  KNNFLACPTLPNTVKI*YPLKNTAICILIQMSQEILIENNNSSIDETITRHHITIGTQTS 519
            +N  L  P+ PN      P    A CIL ++   +  +   + +DE +T        Q S
Sbjct: 2134 RNMRLPDPSTPNLKIDLLPEIVEAPCILSEVDAALKAKQMKNDVDEYLTSRQ-----QNS 2188

Query: 520  NILRLFSTELLLVDDETMQYYTGLETASKFSLVLIT 627
              L    T+LLL   E     T        SLVL T
Sbjct: 2189 TFLSELKTKLLLSSSEASSAGTRYSVPLINSLVLYT 2224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,187,172
Number of Sequences: 28952
Number of extensions: 282264
Number of successful extensions: 788
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)