Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0154
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...   173   2e-47
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    28   1.2  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   3.5  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   4.7  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    26   6.1  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.1  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   8.1  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score =  173 bits (422), Expect(2) = 2e-47
 Identities = 83/150 (55%), Positives = 107/150 (71%)
 Frame = +3

Query: 264 AVQLSKVRESVLIISTDPAHNISDAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEE 443
           A+Q+SKVR SVL+ISTDPAHN+SDAF  KF K   KV GFDNL AMEIDPN+ + E+ E+
Sbjct: 40  AIQMSKVRSSVLLISTDPAHNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ 99

Query: 444 YFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRL 623
               +        G+MQ++    PGIDEA+++AE++K +K M F  V+FDTAPTGHTLR 
Sbjct: 100 --ADQQNPNNPLSGMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRF 157

Query: 624 LSFPQVVERGLGKLMRLKSKVXPFINQIAS 713
           L+FP V+E+ LGKL  L S+  P INQ+ S
Sbjct: 158 LNFPTVLEKALGKLGGLSSRFGPMINQMGS 187



 Score = 31.5 bits (68), Expect(2) = 2e-47
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = +3

Query: 81  FEPLEPSLKNVIDQKSLRWIF 143
           F+PL  +L+N+++Q SL+WIF
Sbjct: 3   FDPLPGTLENLLEQTSLKWIF 23


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +3

Query: 459 SEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQ 638
           ++A+     +   ++ +   +D    Y ++  L+    F   V+D +  GH+  L SFP 
Sbjct: 641 TDALYSGSSICYSLIFSHSLLDLTFQYVDIASLLS--QFLLCVYDPSNVGHSFALASFPY 698

Query: 639 V 641
           V
Sbjct: 699 V 699


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 322 TISLMHSTRNFLKYQQRLKGLTTYSLWRLIRML 420
           T+ L ++  +F++YQ  +K   T  +W+LI++L
Sbjct: 2   TVILQYAD-HFVEYQNDMKRYDTLHVWKLIKLL 33


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +1

Query: 268 FSCRKFANLC*SYQLILPTISLMHSTRNFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNI 447
           F C KF NL     LI  T S+  +   FL Y +       +    L ++L  QSC+  +
Sbjct: 168 FGCIKFGNLNLDKALICSTCSISAALLLFLLYVRLPFWTLKHMFSGLFQVLGVQSCVVIV 227

Query: 448 LKENLRL*D 474
            K  + L D
Sbjct: 228 TKGLMYLFD 236


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -3

Query: 418 TFGSISIANRLSNPLTFVGTLENFWSNASEILWAGSVDMIN 296
           T G +S    L NP  F G  E  W      LW  +   +N
Sbjct: 226 TQGIMSARGLLENPALFAGYEETPWGCVERFLWYSTSYSLN 266


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 578 TKVHAFY*FHHLSIAHSLINT 516
           T+VHAFY  + L +  S INT
Sbjct: 265 TRVHAFYSLNDLKLETSTINT 285


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 554 FHHLSIAHSLINTRKSSNNLLHDTLVQS 471
           F +L I H L NT +  + ++HD + ++
Sbjct: 95  FENLEILHQLSNTPRDKDAVIHDKIEEN 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,363
Number of Sequences: 5004
Number of extensions: 47935
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)