Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0154
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_05_0014 - 20071514-20071690,20071779-20071894,20072177-200723... 165 3e-41
02_05_0729 - 31271566-31271730,31271799-31271933,31272210-312722... 83 2e-16
09_05_0004 + 20021394-20023430 31 0.69
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017 29 2.8
02_05_0546 + 29889861-29890182,29891057-29892798 29 3.7
02_03_0082 - 15021751-15022330,15022397-15022626 29 3.7
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045... 29 4.8
11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160... 28 8.5
>09_05_0014 -
20071514-20071690,20071779-20071894,20072177-20072315,
20072649-20072672,20072879-20072989,20073089-20073239,
20073357-20073478,20074287-20074556
Length = 369
Score = 165 bits (401), Expect = 3e-41
Identities = 80/147 (54%), Positives = 106/147 (72%)
Frame = +3
Query: 264 AVQLSKVRESVLIISTDPAHNISDAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEE 443
++ L+ R+SVL+ISTDPAHN+SDAF Q+F+K PT V+GF+NL+AMEIDP V + E
Sbjct: 45 SILLASARQSVLVISTDPAHNLSDAFQQRFTKFPTLVRGFNNLYAMEIDPKVENDDFANE 104
Query: 444 YFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRL 623
EG + E+ A PG+DEAMS+AE++KLV+ M++S VVFDTAPTGHTLRL
Sbjct: 105 GMEG----------FLSELTNAIPGVDEAMSFAEMLKLVQTMDYSVVVFDTAPTGHTLRL 154
Query: 624 LSFPQVVERGLGKLMRLKSKVXPFINQ 704
L FP +E+GL K+M LK+K +NQ
Sbjct: 155 LQFPATLEKGLEKMMALKNKFGGLLNQ 181
>02_05_0729 -
31271566-31271730,31271799-31271933,31272210-31272284,
31273003-31273068,31273154-31273222,31273303-31273377,
31273518-31273628,31273947-31274009,31274064-31274453
Length = 382
Score = 83.0 bits (196), Expect = 2e-16
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 33/183 (18%)
Frame = +3
Query: 264 AVQLSKVRESVLIISTDPAHNISDAFDQKFSKVPTKVKGFDNL---------------FA 398
AV+ + L++STDPAH++SD+F Q S V + F++L FA
Sbjct: 90 AVRFANNGHPTLVVSTDPAHSLSDSFAQVASPVEHLLSRFEDLSGGALVPVEGPEAPLFA 149
Query: 399 MEIDPNVGLTELPEEYFEGESEAMR-----LDKGVMQEIVGAF----------PGIDEAM 533
+EI+P E + ++ + GV+ E +G PG+DEA+
Sbjct: 150 LEINPEKAREEFRAASQKNGGTGVKDFMDGMGLGVLAEQLGELKLGELLDTPPPGLDEAI 209
Query: 534 SYAEVMKLVKGMNFSA---VVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVXPFINQ 704
+ ++VM+ ++ +S +VFDTAPTGHTLRLLS P ++ +GK+++L+SK+ +
Sbjct: 210 AISKVMQFLEAQEYSMFRRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLRSKIASATSA 269
Query: 705 IAS 713
I S
Sbjct: 270 IKS 272
>09_05_0004 + 20021394-20023430
Length = 678
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 572 VHAFY*FHHLSIAHSLINTRKSSNNLLHDTLVQSHS 465
+HAF H+ +AH L + S +N+ +TL+ HS
Sbjct: 197 LHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHS 232
>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
Length = 824
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 432 LPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVV 587
+ +YF G S + + GV E VGA I + +S V K+ G F+ V
Sbjct: 531 IENQYFLGSSYCWKPNDGVKPEDVGALHLIPKELSMKVVSKIEAGERFTVYV 582
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 604 VGAVSNTTALKFMPFTSFITSA*LIASSIPGKAPTISCMTP 482
VG N A+ +P T+ +TSA L+ PG +P S P
Sbjct: 38 VGVPRNLPAVAALPATAPVTSASLVTLKPPGSSPVKSVNNP 78
>02_03_0082 - 15021751-15022330,15022397-15022626
Length = 269
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 438 EEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGM 569
+E E E A +LDK + +PG DE ++ +++KLVK +
Sbjct: 49 KEDCESEKGAHKLDKMLEDHRTSLYPGCDE-KAFGDLLKLVKNI 91
>05_06_0104 -
25603568-25603867,25603965-25604162,25604247-25604526,
25604615-25605419,25605518-25606673
Length = 912
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Frame = +3
Query: 417 VGLTELP----EEYFEGESEAMRLDKGVMQE------IVGAFPGIDEAMSYAEVMKLVKG 566
VG TEL E+ F+ E+ +R+D E ++GA PG ++ + V+
Sbjct: 611 VGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVARLIGAPPGYVGHEEGGQLTEQVRR 670
Query: 567 MNFSAVVFDTAPTGHTLRLLSFPQVVERG 653
+S ++FD H + QV++ G
Sbjct: 671 RPYSVILFDEVEKAHVAVFNTLLQVLDDG 699
>11_08_0011 +
27612206-27615110,27615211-27615538,27615989-27616059,
27616962-27617118,27617676-27617709
Length = 1164
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +3
Query: 339 FDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPG 518
F+Q ++PT+++G +L + I N +P + F RL G + G PG
Sbjct: 159 FNQLSGRIPTELQGLRSLININIQTNYLTGLVPNDLFNHTPSLRRLIMG-NNSLSGPIPG 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,221
Number of Sequences: 37544
Number of extensions: 269512
Number of successful extensions: 690
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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