Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0154
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   2e-27
SB_24393| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)                  29   3.7  
SB_31842| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score =  120 bits (288), Expect = 2e-27
 Identities = 52/82 (63%), Positives = 68/82 (82%)
 Frame = +3

Query: 468 MRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVE 647
           M + K ++ E++GAFPGIDEAMS+AEVM+LV  M+FS V+FDTAPTGHTLRLLSFP V+E
Sbjct: 2   MSMGKAMISELLGAFPGIDEAMSFAEVMRLVNSMDFSTVIFDTAPTGHTLRLLSFPSVIE 61

Query: 648 RGLGKLMRLKSKVXPFINQIAS 713
           + LGK++ LK+ + PFI+Q  S
Sbjct: 62  KSLGKILSLKNSISPFISQFGS 83


>SB_24393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -3

Query: 388 LSNPLTFVGTLENFWSNASEILWAGSVDMINTDSRTFDS 272
           +SN L   GT E  +  A E +WAG  ++I+ +S+TF S
Sbjct: 28  VSNNLELNGTAELIFHEAKERVWAGLSNVIDFNSKTFFS 66


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 477  DKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRL-LSFPQVVERG 653
            D+GV +   GA PG+D     AE+ + ++  N +A     A  GH+ R  L++     R 
Sbjct: 899  DRGVFR---GALPGVDNMREQAELNEELESKNTAATKIQAAYRGHSTRQGLNWKLPSGRT 955

Query: 654  LGKLMR 671
             G  MR
Sbjct: 956  FGAAMR 961


>SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)
          Length = 872

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 402 EIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVK-GMNFS 578
           + D N   TE+P+E    E++ +  D G + + +   P   E++S  EV  LV+      
Sbjct: 260 QTDTNQDDTEIPDELPRKETDRLSADLGELGQDLE--PIRTESVSTQEVRILVESSFEIE 317

Query: 579 AVVFDTAPTGHTLRLL 626
           AV  +  P  H +RL+
Sbjct: 318 AVACEGVPLVHCVRLM 333


>SB_31842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 402 EIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVK-GMNFS 578
           + D N   TE+P+E    E++ +  D G + + +   P   E++S  EV  LV+      
Sbjct: 41  QTDTNQDDTEIPDELPRKETDRLSADLGELGQDLE--PIRTESVSTQEVRILVESSFEIE 98

Query: 579 AVVFDTAPTGHTLRLL 626
           AV  +  P  H +RL+
Sbjct: 99  AVACEGVPLVHCVRLM 114


>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 427 VNPTFGSISIANRLSNPLTFVGTLENFWSNASEI 326
           + P   S +I N LSN   + G LE +W N++ I
Sbjct: 198 MQPYIPSDTILNFLSNRTAYGGVLERYWLNSNGI 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,413,061
Number of Sequences: 59808
Number of extensions: 330348
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)