Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0154
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical p...   161   1e-43
U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical pr...    58   8e-09
AF099917-5|AAC68783.2|  219|Caenorhabditis elegans F-box a prote...    29   2.5  
AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical...    29   4.4  
AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinas...    29   4.4  
AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinas...    29   4.4  
AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical...    28   5.8  
AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical...    28   5.8  

>Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK637.5 protein.
          Length = 342

 Score =  161 bits (392), Expect(2) = 1e-43
 Identities = 86/157 (54%), Positives = 105/157 (66%), Gaps = 10/157 (6%)
 Frame = +3

Query: 264 AVQLSKVRESVLIISTDPAHNISDAFDQKFSKVPTKVKGFDNLFAMEID--PNVGLTELP 437
           A QLSKVRE VL+ISTDPAHNISDAF QKF+K PT V+GF NLFAMEID  PN    E+ 
Sbjct: 39  AAQLSKVRERVLLISTDPAHNISDAFSQKFTKTPTLVEGFKNLFAMEIDSNPNGEGVEMG 98

Query: 438 --EEYF------EGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFD 593
             EE        EG S    + K  +Q   G  PGIDEAMS+ E++KL+  ++F  VVFD
Sbjct: 99  NIEEMLQNAAQNEGGSGGFSMGKDFLQSFAGGLPGIDEAMSFGEMIKLIDSLDFDVVVFD 158

Query: 594 TAPTGHTLRLLSFPQVVERGLGKLMRLKSKVXPFINQ 704
           TAPTGHTLRLL FP ++E+   K++ L+    P +NQ
Sbjct: 159 TAPTGHTLRLLQFPTLLEKVFTKILSLQGMFGPMMNQ 195



 Score = 32.7 bits (71), Expect(2) = 1e-43
 Identities = 11/20 (55%), Positives = 18/20 (90%)
 Frame = +3

Query: 84  EPLEPSLKNVIDQKSLRWIF 143
           + LE S+KN+++QK+L+WIF
Sbjct: 3   DQLEASIKNILEQKTLKWIF 22


>U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical
           protein F47G3.2 protein.
          Length = 192

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 24/54 (44%), Positives = 36/54 (66%)
 Frame = +3

Query: 546 VMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVXPFINQI 707
           +++L+  + F  VVFDTA TGHTLRLL FP +V+    K++ L+  + P +N I
Sbjct: 1   MIELIDSLGFDVVVFDTASTGHTLRLLQFPTIVDNFFTKILSLQGMLEPMLNNI 54


>AF099917-5|AAC68783.2|  219|Caenorhabditis elegans F-box a protein
           protein 24 protein.
          Length = 219

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 149 RERRSWENYVQVFKPRNCRYPKTI*LTNLFF---FVI*LQSRSSAVESSRICVNHIN 310
           RER   E+++++ K   C + KTI L N  F     I     +  +E+    + HIN
Sbjct: 38  RERDERESFIEILKSVKCIHVKTIKLDNFSFNNAITILQYCNTKVLENIEFWITHIN 94


>AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical
           protein Y51H7C.12 protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 352 NFWSNASEILWAGSVDMINTDSR 284
           +FWS   + LW GS D +  +SR
Sbjct: 349 DFWSMHQDTLWTGSFDQLELESR 371


>AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinase
           protein 32, isoformb protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 542 SIAHSLINTRKSSNNLLHDTLVQSHSLRFSFK 447
           S +HS +   ++SN  LH T   + SLRF  K
Sbjct: 630 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 661


>AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinase
           protein 32, isoforma protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 542 SIAHSLINTRKSSNNLLHDTLVQSHSLRFSFK 447
           S +HS +   ++SN  LH T   + SLRF  K
Sbjct: 699 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 730


>AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17b protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 673 KRISLPRPRSTTCGNDRSLRVCPVGAVSNTTALKFMPFTSFITSA*LIASSIPGKAPTIS 494
           K   LP+P S+  G   S  +   G+ +++T     PF++  T+A L  SS    + T +
Sbjct: 273 KEADLPKPASSLFGASPSKPLVFGGSSADSTTSAPKPFSALSTAASLFGSS--SASTTTT 330

Query: 493 CMTPLS 476
              PLS
Sbjct: 331 ATQPLS 336


>AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17a protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 673 KRISLPRPRSTTCGNDRSLRVCPVGAVSNTTALKFMPFTSFITSA*LIASSIPGKAPTIS 494
           K   LP+P S+  G   S  +   G+ +++T     PF++  T+A L  SS    + T +
Sbjct: 288 KEADLPKPASSLFGASPSKPLVFGGSSADSTTSAPKPFSALSTAASLFGSS--SASTTTT 345

Query: 493 CMTPLS 476
              PLS
Sbjct: 346 ATQPLS 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,989,269
Number of Sequences: 27780
Number of extensions: 260368
Number of successful extensions: 557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)