Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0153
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81532-2|CAB04324.1|  290|Caenorhabditis elegans Hypothetical pr...    29   0.70 
Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical pr...    29   0.70 
Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    28   1.6  
L23648-6|AAA28032.2|  390|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    27   2.1  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   2.1  
AF016421-10|AAC25792.1|  473|Caenorhabditis elegans Hypothetical...    27   2.8  
Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z68752-4|CAA92983.1|  447|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    26   5.0  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    26   5.0  
Z81051-9|CAD21703.1|  531|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AC006656-2|AAF39880.1|  326|Caenorhabditis elegans Hypothetical ...    26   6.6  
AC087735-2|AAK31562.1|  161|Caenorhabditis elegans Hypothetical ...    25   8.7  

>Z81532-2|CAB04324.1|  290|Caenorhabditis elegans Hypothetical
           protein F36F2.2 protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 285 KALHGFHHQKLKLTEREEAAPKMPRGQRFSL 193
           K L   H  ++  T  EE+ P  P+GQRF L
Sbjct: 163 KGLEEVHEIEVDKTVIEESIPNQPKGQRFDL 193


>Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical
           protein F20D1.7 protein.
          Length = 695

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
 Frame = +3

Query: 9   PGLQEFGTRIRETQATNMKTII---CLFTIAIAAMAAVTNL------SNVLKN-GNDNFT 158
           P L +    +R  Q   ++T+    C       A+ A+T+L       N+L+N G D+  
Sbjct: 89  PSLDDSDWFLRRNQFPELQTLHFKNCSLKTFPKALMALTSLLELDLSDNMLENLGADSIH 148

Query: 159 ARMFTEVV-KNNPGKSVVLSAFSVLPPLAQLALASDGET 272
            R    V+ +NN  KS+ +  F  +P L  L L+ +  T
Sbjct: 149 IRSIQRVILRNNQIKSIGVHVFRYMPTLKMLDLSGNNMT 187


>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 178 TSVNILAVKLSFPFLSTLERFVTAAIAAMAIVNKQMIVFMFV 53
           TSV +  +K +F F+ TLERF++         N++ I F ++
Sbjct: 87  TSVTMGIIKGTFAFMITLERFISVFFPIHYRNNRRKIPFYWI 128


>L23648-6|AAA28032.2|  390|Caenorhabditis elegans Hypothetical
           protein F44B9.5 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 15  LQEFGTRIRETQATNMKTIICLFTIAIAAMAA 110
           L+EF  R+ ET A N+K  +  F I+ A  AA
Sbjct: 246 LEEFTARVAETLAGNLKIAVSKFGISDATEAA 277


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -2

Query: 176  FGKHSGCEVIVSIFEHIREICDG--CHCRDG---DSKQTNDCLHV 57
            FG + GC+ I +      ++ DG  CHCRDG   D +   +C+ +
Sbjct: 4095 FGNNGGCKHICT------DVRDGFYCHCRDGFRPDPQSPKECIDI 4133


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
           protein F57C7.4 protein.
          Length = 1484

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 TEVVKNNPGKSVVLSAFSVLPPLAQLAL 254
           T ++KN P KS V  +F++ P   QLA+
Sbjct: 674 TTIIKNVPSKSDVFVSFTIPPAGTQLAM 701


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -2

Query: 176  FGKHSGCEVIVSIFEHIREICDG--CHCRDG---DSKQTNDCLHV 57
            FG + GC+ I +      ++ DG  CHCRDG   D +   +C+ +
Sbjct: 4095 FGNNGGCKHICT------DVRDGFYCHCRDGFRPDPQSPKECIDI 4133


>AF016421-10|AAC25792.1|  473|Caenorhabditis elegans Hypothetical
           protein F44E7.7 protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 190 LFFTTSVNILAVKLSFPFLSTLE 122
           LFF  S  +L V + FPFL+T E
Sbjct: 443 LFFIVSGIVLIVNIPFPFLTTAE 465


>Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical
           protein F01G10.5 protein.
          Length = 824

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 117 NLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLS 215
           +L+  L  GNDN T      ++   P KSV  S
Sbjct: 658 SLAEFLSKGNDNETLEEMMRLIAQTPRKSVAFS 690


>Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical
           protein C29A12.3a protein.
          Length = 773

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 26  RHEDSRDAGHKHEDNHLFVYYRHRGNGS 109
           +++  R   HK ED  +F+Y R++ N +
Sbjct: 289 KYDGERGQIHKREDGQIFIYSRNQENNT 316


>Z68752-4|CAA92983.1|  447|Caenorhabditis elegans Hypothetical
           protein T12G3.4 protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 131 HIREICDGCHCRDGDSKQTNDCLHVCGLRLSN 36
           H  ++  G H  DG  K+ N C    GLRLS+
Sbjct: 147 HAVQLAQGNHDCDGSYKKMNLCGRPLGLRLSD 178


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 129 VLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLP 233
           +L   +D    +  +EVV N P +++ LSAF   P
Sbjct: 359 LLTPNSDALLQKKLSEVVHNPPQRAIGLSAFPAFP 393


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 126 NVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPP 236
           N+ +NG   F A +   V++NN G+ +   A  V PP
Sbjct: 370 NLGRNGPPPFQAGVPPPVIQNNMGRPIAPPAAMVRPP 406


>Z81051-9|CAD21703.1|  531|Caenorhabditis elegans Hypothetical
           protein C55A6.10 protein.
          Length = 531

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 94  SRQWQPSQISLMCSKMETITSQPECLP 174
           +R W+  Q+S  C K+   T  P+  P
Sbjct: 163 ARNWEVDQLSKQCEKLVAETGDPDMHP 189


>AC006656-2|AAF39880.1|  326|Caenorhabditis elegans Hypothetical
           protein H12I13.2 protein.
          Length = 326

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 117 NLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELL 287
           NLS  + N   +       +++ N PG    L  F+  P L ++    DG  ++  L
Sbjct: 66  NLSTGIANNGSSCWLNCLIQIMFNTPGVEFSLHQFATKPFLERMRDTKDGNRNKVAL 122


>AC087735-2|AAK31562.1|  161|Caenorhabditis elegans Hypothetical
           protein Y35H6.1 protein.
          Length = 161

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 25  SARGFERRRPQT*RQSFVCLLSPSRQWQ 108
           SAR F +RRP+   +S     SP ++W+
Sbjct: 36  SARRFPQRRPRPKEESSEAEKSPPKRWE 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,438,293
Number of Sequences: 27780
Number of extensions: 144823
Number of successful extensions: 475
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)