Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0153
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.16 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.16 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   0.38 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   0.87 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   0.87 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   0.87 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   8.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   8.1  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   8.1  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    20   8.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    20   8.1  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -2

Query: 221 KCREDNAFPWIIFHYFGKHSGCE-VIVSIFEHIREICDGCHCRDGDSKQTNDCLHV 57
           +C E      +I HY+    G E +++ I + + +   G        K  N+C HV
Sbjct: 121 RCTERPEDGALILHYYSDRPGLEHIVIGIVKTVAKKLHGTDIEMRILKTKNECDHV 176


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -2

Query: 221 KCREDNAFPWIIFHYFGKHSGCE-VIVSIFEHIREICDGCHCRDGDSKQTNDCLHV 57
           +C E      +I HY+    G E +++ I + + +   G        K  N+C HV
Sbjct: 121 RCTERPEDGALILHYYSDRPGLEHIVIGIVKTVAKKLHGTDIEMRILKTKNECDHV 176


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.38
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 PGKSVVLSAFSVLPPLAQLALASDGET-HEELLKAIGFPD 308
           P K +   AF   PPL + A+    +T    ++KA+ F D
Sbjct: 406 PSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTFKD 445


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 35  DSRDAGHKHEDNHLFVYYRHRGNGSRHKS 121
           +SR A   ++DN+   +Y H  N +RH S
Sbjct: 411 NSRCANFDNQDNN---HYNHNHNQARHSS 436


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 219 MPRGQRFSLDYFSLLR 172
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 219 MPRGQRFSLDYFSLLR 172
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 79  CLLSPSRQWQPSQIS 123
           C+L P   W   QIS
Sbjct: 39  CILKPKPLWTGKQIS 53


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -2

Query: 110 GCHCRDG 90
           GCHC+ G
Sbjct: 246 GCHCKPG 252


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 197 EKRCPLGIFG 226
           EKR P+G +G
Sbjct: 179 EKRAPMGFYG 188


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 197 EKRCPLGIFG 226
           EKR P+G +G
Sbjct: 179 EKRAPMGFYG 188


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 197 EKRCPLGIFG 226
           EKR P+G +G
Sbjct: 179 EKRAPMGFYG 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,350
Number of Sequences: 438
Number of extensions: 1892
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)