Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0153
(315 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 30 0.28
At5g37490.1 68418.m04515 U-box domain-containing protein similar... 29 0.50
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 29 0.50
At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containi... 29 0.87
At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containi... 29 0.87
At2g28725.1 68415.m03492 hypothetical protein 27 2.6
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi... 27 2.6
At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containi... 27 3.5
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont... 26 6.1
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 26 6.1
At1g78920.1 68414.m09201 vacuolar-type H+-translocating inorgani... 26 6.1
At1g62700.1 68414.m07077 no apical meristem (NAM) family protein... 26 6.1
At4g30670.1 68417.m04348 expressed protein 25 8.1
At3g46200.1 68416.m05001 MutT/nudix family protein similar to he... 25 8.1
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 25 8.1
At2g36350.1 68415.m04461 protein kinase, putative similar to pro... 25 8.1
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
thaliana] GI:3327870
Length = 1163
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 215 REDNAFPWIIFHYFGKHSGCEVIVSIFEHIREICDG 108
R D +++F KHS CE+ VS E ++ G
Sbjct: 2 RSDTVLDYVVFELSPKHSKCELFVSSNEQTEKLASG 37
>At5g37490.1 68418.m04515 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 435
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 239 ERRQHRKCREDNAFPWIIFHYFGKHSGCEVIVSIFEHI 126
E ++RKC +N+ W++ F K SG E + + I
Sbjct: 153 ESEKNRKCVNENSVGWVLCDCFDKFSGDEKLTFMLNEI 190
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 29.5 bits (63), Expect = 0.50
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 174 EVVKN--NPGKSVVLSAFSVLPPLAQLALASDGETHEELL 287
E VKN +PGK VL +++L P AQL + + E E L+
Sbjct: 636 EQVKNKFSPGKLRVLPLYAMLSPAAQLRVFEEVEKEERLV 675
>At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 511
Score = 28.7 bits (61), Expect = 0.87
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 114 TNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKA 293
T +S +NGN + +MF + K+ K ++ SVLP A L G E +
Sbjct: 184 TVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARE 243
Query: 294 IGFPDD 311
GF D+
Sbjct: 244 NGFFDN 249
>At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 613
Score = 28.7 bits (61), Expect = 0.87
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 212 EDNAFPWIIFHYFGKHSGCEVIVSIFEHIRE 120
+D F ++ +GKH CE + IFE +RE
Sbjct: 434 KDPVFWNVMISGYGKHGECESAIEIFELLRE 464
>At2g28725.1 68415.m03492 hypothetical protein
Length = 112
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 9 PGLQEFGTRIRETQATNMKTIICLFTIAIAAMAAVTNLSNVLKNGNDNF 155
P L++ TR T TI+ + T+A+A+ A + LK+ +D F
Sbjct: 3 PILEKTSTRWEVLVQTATWTILLMITVALASFAPEMAFVSKLKSSSDGF 51
>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 491
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 117 NLSNVLKNGNDNFTARMFTEVVK 185
NL +LKNG DN A +F +++
Sbjct: 431 NLLEILKNGTDNIGAEIFEPLIR 453
>At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 687
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 236 RRQHRKCREDNAFPWIIFHYFGKHSGCEVIVSIFEHIREICDGC 105
R Q KC ED A + +GK+S + + +F+ +REI GC
Sbjct: 70 RSQECKCDEDVALS--VIKTYGKNSMPDQALDVFKRMREIF-GC 110
>At2g20210.1 68415.m02363 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 604
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 126 NVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAI 296
N+ KN TAR ++++ P + ++++++PP A L L T + LK +
Sbjct: 503 NISKNRGGLETARFLSKLIPLAPKLISIDASYNLMPPEALLMLCDSLRTAKGDLKRL 559
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 29 HEDSRDAGHKHEDNHLFVYYRHRGNGSRHKS 121
H D D H H+ NH ++ H G+ H S
Sbjct: 311 HHD-HDHDHHHDHNHDHDHHHHDGHDHHHHS 340
>At1g78920.1 68414.m09201 vacuolar-type H+-translocating inorganic
pyrophosphatase (AVPL1) identical to vacuolar-type
H+-translocating inorganic pyrophosphatase GI:6901676
from [Arabidopsis thaliana]
Length = 802
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 154 KLSFPFLSTLERFVTAAIAAMAIVNKQMIVFMFVACVSRILV 29
KL+ LS + F AI M +IVF+F C+ L+
Sbjct: 40 KLNVRVLSIILLFCFGAIFYMGASTSPIIVFVFTVCIISFLL 81
>At1g62700.1 68414.m07077 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) [Arabidopsis thaliana];
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 394
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 31 RGFERRRPQT*RQSFVCLLSPSRQWQPSQISLMCSKMETITSQP 162
R F+++ T R+ SPS+ W Q+S M S E I+S P
Sbjct: 152 RVFKKKLAATVRKMGDYHSSPSQHWYDDQLSFMAS--EIISSSP 193
>At4g30670.1 68417.m04348 expressed protein
Length = 102
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 23 IRHEDSRDAGHKHEDNHLFVYYRHRGNGSRHK 118
+ HE++++ H +HL V+ R + S+ K
Sbjct: 39 VEHEENKEGSSGHHHDHLRVFVRKSKSKSKKK 70
>At3g46200.1 68416.m05001 MutT/nudix family protein similar to head
organizer protein P17F11 GI:17976973 from [Xenopus
laevis]; contains a NUDIX hydrolase domain IPR000086
Length = 311
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 110 GCHCRDGDSKQTNDCLHVCGLRL 42
G +C D D TN+ HVC LRL
Sbjct: 75 GGYCLDDDDGSTNEVPHVC-LRL 96
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 274 WVSPSEAKAN*ARGGSTENAERTTLFPGLFF 182
WVS S+A+ R G T + E L P FF
Sbjct: 367 WVSRSQAEQRRGRTGRTCDGEVYRLVPSAFF 397
>At2g36350.1 68415.m04461 protein kinase, putative similar to
protein kinase KIPK (KCBP-interacting protein kinase)
[Arabidopsis thaliana] gi|7716430|gb|AAF68383
Length = 949
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 66 SSCLWPASLESSCRIP 19
S+C+ P +E SCR+P
Sbjct: 736 SNCIQPLCIEPSCRVP 751
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,084,181
Number of Sequences: 28952
Number of extensions: 136478
Number of successful extensions: 503
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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