Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0150
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.37 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   3.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.5  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   6.1  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   6.1  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   8.1  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 92  SLTMSLWIKENCVSFFQLF--CIKVIKTGR 175
           S+   +W+  +C SFFQ F  C   IK GR
Sbjct: 404 SVNAGMWMWLSCSSFFQQFFHCYCPIKFGR 433


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 382 KCINFFFASLKVFYAE 335
           KC+ FF  +L +FY +
Sbjct: 63  KCLAFFCTALVIFYCQ 78


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 382 KCINFFFASLKVFYAE 335
           KC+ FF  +L +FY +
Sbjct: 296 KCLAFFCTALVIFYCQ 311


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 382 KCINFFFASLKVFYAE 335
           KC+ FF  +L +FY +
Sbjct: 296 KCLAFFCTALVIFYCQ 311


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 194 FIMDGNRRYAKKNSVDKSTGH 256
           F+ +   +YA KN VDK   H
Sbjct: 351 FVHEIWNKYALKNEVDKRVRH 371


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 194 FIMDGNRRYAKKNSVDKSTGH 256
           F+ +   +YA KN VDK   H
Sbjct: 307 FVHEIWNKYALKNEVDKRVRH 327


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 536 NNRLCLNIAYAYTGRDE 586
           N  LC +I YA+ G D+
Sbjct: 48  NPDLCTHINYAFVGLDK 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,514
Number of Sequences: 336
Number of extensions: 3644
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)