Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0150
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 146 3e-36
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 30 0.30
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 27 1.6
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 27 1.6
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 27 2.1
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.8
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 2.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.8
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 26 3.7
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 6.5
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 8.6
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 8.6
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 25 8.6
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 25 8.6
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.6
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 8.6
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 25 8.6
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 25 8.6
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 146 bits (353), Expect = 3e-36
Identities = 67/147 (45%), Positives = 93/147 (63%)
Frame = +2
Query: 152 IKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVY 331
I IK G+VPQHIAF+MDGNRR+A++ ++ GH GF+ L LK CL LG+ EV+ +
Sbjct: 26 INTIKRGKVPQHIAFVMDGNRRWARQRRMETIEGHSSGFEALKSLLKVCLKLGVKEVSAF 85
Query: 332 AFSIENFKRSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLVS 511
FSIENFKRSK EVD LME+A+ + D +D++G+R+ + G LS L +
Sbjct: 86 TFSIENFKRSKYEVDMLMEIAKNSLTQITAHGDLVDQYGIRIRIVGDLSRLQPDVLETAL 145
Query: 512 KVMLATKDNNRLCLNIAYAYTGRDEIS 592
K + TK N + LN+ + YT R EI+
Sbjct: 146 KAVEITKHNTKATLNVCFPYTSRHEIA 172
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +2
Query: 344 ENFKRSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLVSKVML 523
E + S++ + L+ELA+EK L++++ +DE ++V PE L + + L
Sbjct: 262 EKIEISQQVPENLIELAKEKRSALIEKLADLDEEIADIYVMEE-DPTPEQLMGAIRRTTL 320
Query: 524 ATK 532
A K
Sbjct: 321 ARK 323
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 139 PTILHQSNKDRPSTPTHSIHNGWKQTLREK 228
P+ H++NKD +T H I K+ L+EK
Sbjct: 148 PSKTHKANKDEKATRLHLIIANLKKALKEK 177
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 314 VFLNQGTTLRFQKACQNLYDDQYSCRHYFF 225
V+ N+ + L+ ++ Q+LY YS +HYFF
Sbjct: 407 VYANE-SLLQLLQSSQSLYAHLYSLKHYFF 435
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 475 ESPSHMYSYTPLINLINFIQEILEFFSSQFH 383
E H+Y+ PL++ F++E EF SS H
Sbjct: 102 EEKEHIYTALPLVSKEEFLKEHPEFKSSNDH 132
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 348 TLREAKKKLMH-LWNWLEKNSKISWM 422
TLREAKK+L H W L + +K+ ++
Sbjct: 186 TLREAKKRLKHRFWTELYQGAKLFYL 211
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 575 LCRHKQCSNKACCYLWLRA*PSKLNFSSAP 486
+CR + C +K CY A S L F+S P
Sbjct: 407 ICRSRSCPSKYQCYSCRCARNSSLEFTSLP 436
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 338 SIENFKRSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLVSKV 517
+I N ++ +++ RE+ N+ D+ID + +A R S+ + + V
Sbjct: 2732 NIHNIDNKLRDIKVVLQGWRERLPNVWDDIDIWSDL-----IAWRQSVFKSINKVFLPLV 2786
Query: 518 MLATKDNNRLCLN-IAYAYTGRDEIS 592
+A + N+ N ++Y Y G E++
Sbjct: 2787 SIAQQSTNKSNTNSVSYLYRGYHELA 2812
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 389 LAREKFQNLLDEIDQIDEWGVRVHVAGRLSL 481
L K ++L E++ + +W R+H+ R SL
Sbjct: 282 LPPHKGVDILSEVEAVKDWSKRLHLGPRASL 312
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 159 TLMQNSWKNDTQFSFIHKDIVKEFTKANIGVHKRKNNTVR 40
+L+ + ND F F+ K+ +K F K + K NN VR
Sbjct: 441 SLLNTNMFNDANFEFMVKEHIKNFLK----LLKEHNNPVR 476
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 412 ILEFFSSQFHKCINFFFASLKVFYAECINSYLRYS 308
+LEF +S ++CI+ FA L V C++ + ++S
Sbjct: 564 VLEFLNSCINRCISRVFAYLDV----CVDCFKKHS 594
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 281 QKACQNLYDDQYSCRHYFFSRN 216
Q C L +D Y C+ +FF RN
Sbjct: 78 QTCCSTLTED-YECQEFFFWRN 98
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 187 HSIHNGWKQTLREKK 231
H++HN W Q RE K
Sbjct: 172 HNLHNAWSQLSREAK 186
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 299 LDLGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDE 424
L LG P T F ++F+R E +D ++ L ++ + L E
Sbjct: 392 LRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKE 433
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +2
Query: 212 RRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEE 370
R Y + K+ K K ETLK L+ +PEV + + + +++ E
Sbjct: 49 RHYQNVGNAYKAEALLKDAKKQCETLKSALNGKLPEVNIESHMLSKYRKYLNE 101
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 413 LLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLV--SKVMLATKDNNRLCL 553
+LDE D+I + G R + +S LP H ++++ + + KD RL L
Sbjct: 190 ILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSL 238
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 435 LMSGVYEYMWLGDSH 479
L SGVY WLGD+H
Sbjct: 635 LGSGVYGAHWLGDNH 649
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 348 TLREAKKKLMHLWNWLEKNSKISWMKLIKLMSGVYEY 458
T+ +KK++ LW + ++WMK + S ++EY
Sbjct: 763 TMPVSKKEIAELWKNKVLGTDLTWMKTV---SEIFEY 796
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,734
Number of Sequences: 5004
Number of extensions: 57194
Number of successful extensions: 212
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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