Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0150
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1213 + 24921603-24921746,24921923-24922786 133 1e-31
06_01_0477 + 3404648-3404657,3405385-3405461,3405638-3406501 131 5e-31
01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908 95 5e-20
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 33 0.18
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 29 2.9
03_06_0269 - 32761354-32761857,32762094-32762190,32762387-327624... 28 5.0
08_02_1210 + 25314569-25314596,25315271-25315455,25315539-253156... 28 6.6
09_04_0463 - 17803120-17803233,17803647-17803758,17803866-178039... 27 8.7
>07_03_1213 + 24921603-24921746,24921923-24922786
Length = 335
Score = 133 bits (321), Expect = 1e-31
Identities = 62/153 (40%), Positives = 95/153 (62%)
Frame = +2
Query: 131 SFFQLFCIKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLG 310
+F + + V+ G +P+HIAFIMDGNRRYAK S+ + +GH GF L +L +C ++G
Sbjct: 69 NFIRKCIVAVLSYGPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMG 128
Query: 311 IPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLLPE 490
+ +TVYAFSI+NFKR EV +LMEL EK LL+ + I++ +++ G+L +L E
Sbjct: 129 VKYITVYAFSIDNFKRDLTEVKSLMELMEEKINELLENRNVINKVNCKINFWGKLDMLSE 188
Query: 491 HLRSLVSKVMLATKDNNRLCLNIAYAYTGRDEI 589
+R K+M++T +N L ++ Y EI
Sbjct: 189 PVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEI 221
>06_01_0477 + 3404648-3404657,3405385-3405461,3405638-3406501
Length = 316
Score = 131 bits (316), Expect = 5e-31
Identities = 62/158 (39%), Positives = 94/158 (59%)
Frame = +2
Query: 131 SFFQLFCIKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLG 310
+F + + V+ G +P+HIAFIMDGNRRYAK S+ + +GH GF L +L +C ++G
Sbjct: 50 NFIRKCIVAVLSYGPMPKHIAFIMDGNRRYAKFRSIQEGSGHRVGFSALIASLLYCYEMG 109
Query: 311 IPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLLPE 490
+ +TVYAFSI+NFKR EV +LMEL EK LL+ + I++ +++ G L +L +
Sbjct: 110 VKYITVYAFSIDNFKRDPTEVKSLMELMEEKINELLENRNVINKVNCKINFWGNLDMLSK 169
Query: 491 HLRSLVSKVMLATKDNNRLCLNIAYAYTGRDEISRAAS 604
+R K+M T +N L ++ Y EI A +
Sbjct: 170 SVRVAAEKLMATTAENTGLVFSVCMPYNSTSEIVNAVN 207
>01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908
Length = 295
Score = 94.7 bits (225), Expect = 5e-20
Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = +2
Query: 161 IKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFS 340
++ +P+H+A +MDGN R+A+ + + GH G L ET++ GI +T +AFS
Sbjct: 55 LRAESLPRHVAVVMDGNARWARARGLPSAAGHEAGRRALEETVRLSRAWGIRALTAFAFS 114
Query: 341 IENFKRSKEEVDALMELAREKFQNLL-DEIDQIDEWGVRVHVAGRLSLLPEHLRSLVSKV 517
EN+ R K EVD LM L F+ ++ D + + G+R+ V G S LP L+ + +
Sbjct: 115 NENWSRPKVEVDFLMRL----FERVIHDSVAEFLREGIRLRVIGDSSRLPVSLQKIAREA 170
Query: 518 MLATKDNNRLCLNIAYAYTGRDEISRA 598
T++N++L L +A +Y+GR +I +A
Sbjct: 171 EETTRNNSQLDLTLAISYSGRRDIVQA 197
>12_02_0699 + 22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 33.1 bits (72), Expect = 0.18
Identities = 27/93 (29%), Positives = 45/93 (48%)
Frame = +2
Query: 254 HHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDEIDQ 433
HH D+ ++LK L + PEV V E+ R + + A++ L +NL+D D
Sbjct: 827 HHTDDDEYIQSLKEALKVKSPEVLVRTLRAESVDR--QMLAAVLSLIVTMTRNLMDAEDL 884
Query: 434 IDEWGVRVHVAGRLSLLPEHLRSLVSKVMLATK 532
A S+L E L+S+V+K+ + +K
Sbjct: 885 PPLIDAINRAANGFSILTE-LQSMVTKLSMKSK 916
>06_03_0497 + 21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 76 IRFGEFFNDVFVDKRKLCIIFPTILHQSNKDRPSTPTHSI 195
I E F+DV D K I +P I Q+N + P PT+ +
Sbjct: 960 IAMWEEFSDVEKDFSKFDIQYPPITRQNNGELPINPTNQL 999
>03_06_0269 -
32761354-32761857,32762094-32762190,32762387-32762421,
32763035-32763040
Length = 213
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 183 WGTRPVFITLMQNSWKNDTQFSFIH 109
W + VF+T+ Q SWK + + + +H
Sbjct: 45 WQVQLVFLTMAQESWKKEAEETGVH 69
>08_02_1210 +
25314569-25314596,25315271-25315455,25315539-25315648,
25315756-25315909,25316213-25316237,25316566-25316756,
25316837-25316899,25317012-25317075,25318078-25318109
Length = 283
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 308 GIPEVTVYAFSIENFKRSKE--EVDALMELAREKFQNLLDEIDQIDE 442
GIP +E + E++ M+L R++ Q+LLD I ++DE
Sbjct: 221 GIPNTGNVVMEVEKVLSNPNMLEIEKAMKLLRDQEQSLLDAIARLDE 267
>09_04_0463 -
17803120-17803233,17803647-17803758,17803866-17803927,
17804171-17804269,17804370-17804474,17804560-17804639,
17806445-17806517,17806611-17806700,17807215-17807277,
17808104-17808155,17808504-17808604,17809139-17809238,
17809683-17809746,17810127-17810184,17810549-17810635,
17810736-17810870,17810950-17811054,17811247-17811351,
17811427-17811663,17812287-17812380,17812863-17813020,
17813289-17813363,17813448-17813512,17814206-17814260
Length = 762
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +2
Query: 239 DKSTGHHKGFDKLSETLKWCLDLGIP-----EVTVYAFSIENFKRSKEEVDALMELAREK 403
+KS+ H +D S W D +P ++ +Y ++ F + +E L +R
Sbjct: 199 EKSSQHFGTYDFDSSPFDWGDDYRLPNLPEADLVIYEMNVRAF--TADESSGLDSTSRGS 256
Query: 404 FQNLLDEIDQIDEWGV 451
+ L+D+I + E GV
Sbjct: 257 YLGLIDKIPHLLELGV 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,864,327
Number of Sequences: 37544
Number of extensions: 320936
Number of successful extensions: 903
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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