Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0150
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34705| Best HMM Match : Prenyltransf (HMM E-Value=3.5)              46   2e-05
SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)                 32   0.31 
SB_54794| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  31   0.96 
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)          29   3.9  
SB_58956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)                   29   3.9  
SB_28930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_52928| Best HMM Match : PKD (HMM E-Value=0)                         28   6.7  
SB_48508| Best HMM Match : DNA_pol3_theta (HMM E-Value=1.1)            28   6.7  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_4645| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)                 27   8.9  

>SB_34705| Best HMM Match : Prenyltransf (HMM E-Value=3.5)
          Length = 122

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 18/31 (58%), Positives = 26/31 (83%)
 Frame = +2

Query: 200 MDGNRRYAKKNSVDKSTGHHKGFDKLSETLK 292
           MDGNRR+AKK + ++S GH KGF+KL+E ++
Sbjct: 1   MDGNRRFAKKVNCERSKGHEKGFEKLTEKIR 31


>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
          Length = 1382

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
 Frame = +2

Query: 110 WIKENCVSFFQLFC--IKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSE 283
           W   +CV++ +     + V+ T RV   I+   D  R   +K          +  D   E
Sbjct: 287 WFYTDCVAWNKARTKEVYVLSTFRVIARISANRDSRRLLNRKK-------RERAKDCFRE 339

Query: 284 TLKWCLDLG--IPEVTVYAFSIENF-KRSKEEVDALMELAREK--FQNLLDEIDQIDEWG 448
             K C  +   +  V  ++ + +N  K +KE +  +++   EK   +  L+EI   + W 
Sbjct: 340 IAKLCSRMNETVASVLAHSCTTDNGGKEAKETIRQVIDEVVEKRGVKRGLEEIMSEETWN 399

Query: 449 VRVHVAGRLSLLP--EHLRSLVSKVMLATKD 535
            RV  A  + +LP  +H+++L   V   T++
Sbjct: 400 ARVEAADTIPILPIKKHMKALREMVFNITRE 430


>SB_54794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 52  IFTFMYTDIRFGEFFNDVFVDKRKLCIIFPTILHQSNKDRPSTPT 186
           ++T+    IR G FF D++V +    +    ++ + N  RP TPT
Sbjct: 62  VYTYANGTIRRGFFFEDIYVGEDPKDLFAEPVVVEHNPPRPLTPT 106


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 269 DKLSETLKWCLDLGIPEVTVY-AFSIENFKRSKEEVDALMELAREKFQ 409
           D +S  ++WC +L +P+V ++    +   K  K  +  L+E+AR+ F+
Sbjct: 108 DNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLEVARKAFK 155


>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1373

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = +2

Query: 239 DKSTGHHKGFDKLSETLKWC--LDLGIPEVTV----YAFSIENFKRSKEEVDALMELARE 400
           D++T  HK  D   + +K C  L  G   V      Y +    +K + EE ++L+++ARE
Sbjct: 497 DEATADHKTSDLCIQEIKNCQRLTQGPNYVCFLGNKYGYRPVPYKINAEEFESLVDIARE 556

Query: 401 KFQNLLDEIDQIDEW 445
                 +E+D + EW
Sbjct: 557 VENVKKEEVDLLLEW 571


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
 Frame = +2

Query: 239 DKSTGHHKGFDKLSETLKWCLDLGIPEV--------TVYAFSIENFKRSKEEVDALMELA 394
           DK+T   KGF K   T++  + +GIP++        TV  F    F  ++ + +ALME  
Sbjct: 263 DKNTDITKGFVKDDVTVQKDVVIGIPDLSDTRVVMRTVRIFLSSTFTDTRLDRNALMEQV 322

Query: 395 REKFQNLLDE----IDQID-EWGVR 454
            E   +L  E     + +D  WGVR
Sbjct: 323 FEPLTHLCQEHGLAFEVVDLRWGVR 347


>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
          Length = 1515

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 347 NFKRSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLV 508
           N +R KEE D +    +++ + LL  +D  D W V + +AG  S  P   R+L+
Sbjct: 136 NTRRLKEE-DLIPLQEKDRTEPLLQLLD--DNWSVELQIAGEESRRPRLWRALL 186


>SB_58956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 454 SYTPLINLINFIQEILEFFSSQFHKCINFFFASLK 350
           ++T    L  F+ E+  F   Q H+C+N  F S K
Sbjct: 397 AFTDKAELQAFLSELYVFLVDQMHQCVNKVFLSAK 431


>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
          Length = 339

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 475 ESPSHMYSYTPLINLINFIQEILEFFSSQFHKCINFFFASLKVFY 341
           E   + Y YTP + +  FI+ ++   S  F   ++F+   L  F+
Sbjct: 23  EGVRYHYQYTPGVIVFAFIENVIHHHSQPFGVKVDFYLVFLSKFW 67


>SB_28930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -1

Query: 204 SIMNAMCWGTRPVFITLMQNSWKNDTQFSFIHKDIVKEFTKANIGVH 64
           SI N  C G  P  I      WK   Q+ F  KDI KE  K  + +H
Sbjct: 7   SISNFDCTGN-PTSIGARWKRWKAAFQYYFEAKDITKESQKKALLLH 52


>SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 425 IDQIDEWGVRVHVAGRLSLLPEHLRSLVSKVMLATKDNN 541
           +D +    V+VH  G    L  HLR L++ V    KD N
Sbjct: 18  LDNVLNQVVQVHGRGNFPTLDVHLRELINVVSSGLKDEN 56


>SB_52928| Best HMM Match : PKD (HMM E-Value=0)
          Length = 1624

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 390  WLEKNSKISWMKLIKLMSGVYEYMWLG 470
            W E+++ +++  L++LM G Y  MW G
Sbjct: 1262 WEEEDTPLTYEILLELMPGNYALMWYG 1288


>SB_48508| Best HMM Match : DNA_pol3_theta (HMM E-Value=1.1)
          Length = 234

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 97  NDVFVDKRKLCIIFPTILHQSNKDRPSTPTHSIHNGWKQTLREK 228
           N+  V+ RK C  FP++L QSN        H+ +NG   ++ EK
Sbjct: 122 NNRGVELRKSC--FPSLLGQSNPGIVPNRVHAQYNGTLGSIHEK 163


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
 Frame = +2

Query: 227  KNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYA----FSIENFKRSKEEVDALMELA 394
            +NS  K T     F   +++ +  L+  + E   Y      S+E  +R+KEE      L 
Sbjct: 810  QNSSQKVTAKMNSFAAKAQSFEKQLEAAVKEKDRYKKELDTSLEKVQRNKEETLMAQSLV 869

Query: 395  REKFQNLLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLVSKVMLATKDNNRL 547
            +EK + L     ++DE                 +RSL++++    KDN +L
Sbjct: 870  QEKGRKLASYRSEMDE-------------KENQIRSLLNRIDSVEKDNTKL 907


>SB_4645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 365 EEVDALMELAREKFQNLLDEIDQIDEWGVRV 457
           E  D+++  ARE  +  +D ++   +WG RV
Sbjct: 155 EIADSIVRKARETLERAIDLVNTTSKWGARV 185


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 510 ETKLLKCSGNNESRPATCTRTPH 442
           +  +LKC GNN++ P  C    H
Sbjct: 224 QVAVLKCKGNNDNSPLICVVNTH 246


>SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)
          Length = 458

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 381 LWNWLEKNSKISWMKLIK--LMSGVYEYMWL 467
           +W+ LE NSK++W+  +K  L      Y+WL
Sbjct: 408 VWDSLENNSKVTWVHKLKNILDRAGLGYIWL 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,211,028
Number of Sequences: 59808
Number of extensions: 394785
Number of successful extensions: 1295
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)