Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0150
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    24   1.3  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   4.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 92  SLTMSLWIKENCVSFFQLF--CIKVIKTGR 175
           S+   +W+  +C SFFQ F  C   ++ GR
Sbjct: 408 SVNAGMWMWLSCSSFFQQFFHCYCPVRFGR 437


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 320 VTVYAFSIENFKRSKEEVDALMELAREKFQ-NLLDEI-DQIDEW 445
           + +Y  S+  F+R   E+D ++E  R K++ +  D++  +++EW
Sbjct: 23  IFLYFNSLVRFRRFTIELDKVLESPRGKYEFSKYDKLKKKLEEW 66


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 399 KNSKISWMKLIKLMSGVYE 455
           K SK+SW  L K+ +G  E
Sbjct: 31  KESKVSWAALKKMKAGDME 49


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 372 LMHLWNWLEKNS 407
           +M LW W+++NS
Sbjct: 278 VMSLWYWIDRNS 289


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 566 HKQCSNKACCYLWLRA*PSK 507
           H Q   K CC  WL   P++
Sbjct: 392 HMQPRKKNCCRSWLSKFPTR 411


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 566 HKQCSNKACCYLWLRA*PSK 507
           H Q   K CC  WL   P++
Sbjct: 392 HMQPRKKNCCRSWLSKFPTR 411


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 483 NNESRPATCTRTPHSSI*SISS 418
           N++  PA+C  +P ++  SIS+
Sbjct: 155 NDKPIPASCCNSPENNTCSISN 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,508
Number of Sequences: 438
Number of extensions: 4099
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)