Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0150
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17570.1 68415.m02033 undecaprenyl pyrophosphate synthetase f... 149 1e-36
At5g60510.1 68418.m07588 undecaprenyl pyrophosphate synthetase f... 123 8e-29
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 121 3e-28
At5g58784.1 68418.m07364 dehydrodolichyl diphosphate synthase, p... 96 2e-20
At5g58780.1 68418.m07362 dehydrodolichyl diphosphate synthase, p... 95 4e-20
At5g58770.1 68418.m07361 dehydrodolichyl diphosphate synthase, p... 95 4e-20
At2g23410.1 68415.m02795 dehydrodolichyl diphosphate synthase / ... 93 1e-19
At5g58782.1 68418.m07363 dehydrodolichyl diphosphate synthase, p... 93 1e-19
At2g23400.1 68415.m02794 dehydrodolichyl diphosphate synthase, p... 85 5e-17
At2g34580.1 68415.m04248 hypothetical protein 31 0.78
At3g53800.1 68416.m05944 armadillo/beta-catenin repeat family pr... 30 1.0
At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein si... 30 1.4
At3g49980.1 68416.m05465 F-box family protein similar to F-box p... 29 1.8
At3g28270.2 68416.m03531 expressed protein similar to At14a prot... 29 2.4
At3g28270.1 68416.m03530 expressed protein similar to At14a prot... 29 2.4
At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont... 29 2.4
At3g48080.1 68416.m05242 lipase class 3 family protein / disease... 28 4.2
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta... 28 4.2
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 28 4.2
At5g20600.1 68418.m02446 expressed protein 28 5.5
At3g18550.1 68416.m02359 TCP family transcription factor, putati... 28 5.5
At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identica... 27 9.6
At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identica... 27 9.6
>At2g17570.1 68415.m02033 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to dehydrodolichyl diphosphate
synthetase (DEDOL-PP synthase) [GI:796076] and S.
cerevisiae Rer2 [SP|P35196]
Length = 295
Score = 149 bits (362), Expect = 1e-36
Identities = 73/160 (45%), Positives = 104/160 (65%)
Frame = +2
Query: 119 ENCVSFFQLFCIKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWC 298
E F + +VI G +P HIAFIMDGNRRYAKK + +GH GF L L++C
Sbjct: 20 EQIYGFSRRSLFRVISMGPIPCHIAFIMDGNRRYAKKCGLLDGSGHKAGFSALMSMLQYC 79
Query: 299 LDLGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLS 478
+LGI VT+YAFSI+NF+R EEV+++M+L EK ++LL++ + ++G+RV+ G L+
Sbjct: 80 YELGIKYVTIYAFSIDNFRRKPEEVESVMDLMLEKIKSLLEKESIVHQYGIRVYFIGNLA 139
Query: 479 LLPEHLRSLVSKVMLATKDNNRLCLNIAYAYTGRDEISRA 598
LL + +R+ KVM AT N+R+ L I AY DEI +A
Sbjct: 140 LLNDQVRAAAEKVMKATAKNSRVVLLICIAYNSTDEIVQA 179
>At5g60510.1 68418.m07588 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 272
Score = 123 bits (297), Expect = 8e-29
Identities = 62/158 (39%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Frame = +2
Query: 128 VSFFQLFCIKVIKTGRVPQHIAFIMDGNRRYAKKNSVDK-STGHHKGFDKLSETLKWCLD 304
+S + F KV++ G +P +I+FIMDGNRR+AKK +++ GH GF + L++C +
Sbjct: 19 MSLMRKFIFKVLRVGPIPTNISFIMDGNRRFAKKRNLEGLDAGHRAGFISVKYILQYCKE 78
Query: 305 LGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLL 484
+G+P VT+YAF ++NFKR EEV +M+L EK + +D+ + GVR+ AG L+ L
Sbjct: 79 IGVPYVTLYAFGMDNFKRGPEEVKCVMDLMLEKVELTIDQAVSGNMNGVRIIFAGDLNSL 138
Query: 485 PEHLRSLVSKVMLATKDNNRLCLNIAYAYTGRDEISRA 598
E R+ K+M T++N L + + AY+ EI A
Sbjct: 139 NERFRAATKKLMELTEENRDLIVVVCVAYSTSVEIVHA 176
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 121 bits (292), Expect = 3e-28
Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Frame = +2
Query: 128 VSFFQLFCIKVIKTGRVPQHIAFIMDGNRRYAKK-NSVDKSTGHHKGFDKLSETLKWCLD 304
+S + F +V+ G +P +I+FIMDGNRR+AKK N + GH GF + L++C +
Sbjct: 18 MSLMRKFLFRVLCVGPIPTNISFIMDGNRRFAKKHNLIGLDAGHRAGFISVKYILQYCKE 77
Query: 305 LGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLL 484
+G+P VT++AF ++NFKR EEV +M+L EK + +D+ + GVR+ AG L L
Sbjct: 78 IGVPYVTLHAFGMDNFKRGPEEVKCVMDLMLEKVELAIDQAVSGNMNGVRIIFAGDLDSL 137
Query: 485 PEHLRSLVSKVMLATKDNNRLCLNIAYAYTGRDEISRA 598
EH R+ K+M T++N L + + AY+ EI A
Sbjct: 138 NEHFRAATKKLMELTEENRDLIVVVCVAYSTSLEIVHA 175
>At5g58784.1 68418.m07364 dehydrodolichyl diphosphate synthase,
putative / DEDOL-PP synthase, putative similar to
GI:796076
Length = 244
Score = 95.9 bits (228), Expect = 2e-20
Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
Frame = +2
Query: 164 KTGR--VPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAF 337
K GR +P+H+A I+DGNRR+A+K + S GH G +L E K C +G ++++AF
Sbjct: 6 KRGRNIMPKHVAVILDGNRRWAEKRGLGTSEGHEAGARRLMENAKDCFAMGTNTISLFAF 65
Query: 338 SIENFKRSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLVSKV 517
S EN++R ++EV LM L EK+ L ++ + +++ V G + LPE L L+ +V
Sbjct: 66 STENWERPEDEVKCLMALF-EKY--LASDMPYLRSDKIKISVIGNRTKLPESLLGLIEEV 122
Query: 518 MLATKDNNRLCLNIAYAYTGRDEISRA 598
ATK L IA Y+GR +I +A
Sbjct: 123 EEATKSYEGKNLIIAIDYSGRYDILQA 149
>At5g58780.1 68418.m07362 dehydrodolichyl diphosphate synthase,
putative / DEDOL-PP synthase, putative similar to
GI:796076
Length = 302
Score = 94.7 bits (225), Expect = 4e-20
Identities = 56/141 (39%), Positives = 78/141 (55%)
Frame = +2
Query: 176 VPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFK 355
+P+H+A IMDGNRR+AK+ + S GH G +L E + C LGI V+ +AFS EN+
Sbjct: 70 MPRHVAVIMDGNRRWAKRAGLLTSQGHEAGAKRLIEFSELCFKLGIHTVSAFAFSTENWG 129
Query: 356 RSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLVSKVMLATKD 535
R K EV LM L + L +I RV V G L+ +PE L V ++ AT+
Sbjct: 130 RHKIEVKCLMSLIQ---HYLKSKIQYFQREETRVSVIGNLTKIPESLLRTVQEIEEATRS 186
Query: 536 NNRLCLNIAYAYTGRDEISRA 598
+ L +A Y+GR +I RA
Sbjct: 187 YKKKHLILAIDYSGRLDILRA 207
>At5g58770.1 68418.m07361 dehydrodolichyl diphosphate synthase,
putative / DEDOL-PP synthase, putative similar to
GI:796076
Length = 310
Score = 94.7 bits (225), Expect = 4e-20
Identities = 50/141 (35%), Positives = 82/141 (58%)
Frame = +2
Query: 176 VPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFK 355
+P+H+A IMDGN R+AK + GH G + L E ++ C GI +TV+AFS +N+
Sbjct: 77 MPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWI 136
Query: 356 RSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLVSKVMLATKD 535
R + E+D L L ++L E + + VR+ + G S LP+ L ++++V TK+
Sbjct: 137 RPRIEIDFLFSLFE---RSLKTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKN 193
Query: 536 NNRLCLNIAYAYTGRDEISRA 598
N RL L +A Y+G+ ++ +A
Sbjct: 194 NTRLQLIVAVGYSGKYDVLQA 214
>At2g23410.1 68415.m02795 dehydrodolichyl diphosphate synthase /
DEDOL-PP synthase (DPS) identical to dehydrodolichyl
diphosphate synthase [Arabidopsis thaliana] GI:7960765
Length = 303
Score = 93.5 bits (222), Expect = 1e-19
Identities = 52/141 (36%), Positives = 80/141 (56%)
Frame = +2
Query: 176 VPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFK 355
+P+H+AFI+DGNRR+AK+ + S GH G +L + + C +LG+ V+ +AFS EN+
Sbjct: 70 MPRHVAFILDGNRRWAKRAGLTTSQGHEAGAKRLIDIAELCFELGVHTVSAFAFSTENWG 129
Query: 356 RSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLVSKVMLATKD 535
R K E+D LM L + ++N I VRV V G + +PE L + ++ ATK
Sbjct: 130 RDKIEIDNLMSLI-QHYRN-KSNIKFFHRSEVRVSVIGNKTKIPESLLKEIHEIEEATKG 187
Query: 536 NNRLCLNIAYAYTGRDEISRA 598
L +A Y+G+ +I A
Sbjct: 188 YKNKHLIMAVDYSGKFDIMHA 208
>At5g58782.1 68418.m07363 dehydrodolichyl diphosphate synthase,
putative / DEDOL-PP synthase, putative similar to
GI:796076
Length = 289
Score = 93.1 bits (221), Expect = 1e-19
Identities = 69/191 (36%), Positives = 96/191 (50%), Gaps = 4/191 (2%)
Frame = +2
Query: 29 LWFSRTVLFLRL--CT-PIFALVNSLTMSLWIKENCVSFFQLFCIKVIKTGRVPQHIAFI 199
LWF ++L L L C P F SL I + + K ++ +P+H+A I
Sbjct: 5 LWFLLSLLSLLLLPCLRPCFPAKGSLKNKKKIDKGTYVVGEEETPKELQRELMPRHVAVI 64
Query: 200 MDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDA 379
MDGNRR+AK+ + S G+ G +L E C LGI V+ +AFS EN+ R K EV
Sbjct: 65 MDGNRRWAKQTGLLTSQGYEAGAKRLLEFADLCFKLGINTVSAFAFSTENWGRHKIEVKC 124
Query: 380 LMELAREKFQNLL-DEIDQIDEWGVRVHVAGRLSLLPEHLRSLVSKVMLATKDNNRLCLN 556
LM L FQ L +I +RV V G L+ +PE L V ++ ATK + L
Sbjct: 125 LMYL----FQRYLKSKIQFFQSKEIRVSVIGNLAKIPESLLRTVHELEEATKSYKKKHLI 180
Query: 557 IAYAYTGRDEI 589
+A Y+GR +I
Sbjct: 181 LAIDYSGRFDI 191
>At2g23400.1 68415.m02794 dehydrodolichyl diphosphate synthase,
putative / DEDOL-PP synthase, putative similar to
GI:796076; this may be a pseudogene.
Length = 253
Score = 84.6 bits (200), Expect = 5e-17
Identities = 45/119 (37%), Positives = 67/119 (56%)
Frame = +2
Query: 176 VPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFK 355
+P+H++FI+DGNRR+AK++ + + GH G ++ E + C +LGI V+ +AFS EN+
Sbjct: 36 MPRHVSFILDGNRRWAKRDGLTTAQGHEAGTKRIIEIAEVCFELGIHTVSAFAFSTENWG 95
Query: 356 RSKEEVDALMELAREKFQNLLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLVSKVMLATK 532
R K EV LM L L I VRV V G + +PE L + ++ ATK
Sbjct: 96 RDKFEVKCLMSLFN---HYLKSNIQYFQRKEVRVSVIGNKTKIPESLLKEIHEIEEATK 151
>At2g34580.1 68415.m04248 hypothetical protein
Length = 203
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 543 LLLSLVASMTFETKLLKCSGNNESRPATCTRTPHSSI*SISS 418
L+ + VA +LLKC G E PAT T + +S S S+
Sbjct: 162 LISAFVACFYCAKRLLKCCGGEEDSPATATASTSTSTSSASA 203
>At3g53800.1 68416.m05944 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 363
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 302 DLGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDEID 430
DLG P + ++ S ++F+ + + L+ELARE+ LD D
Sbjct: 224 DLGFPRIMIHLASNQDFEVREFALRGLLELAREESVRNLDRGD 266
>At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 549
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 314 PEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDEIDQIDE 442
PEV + + + K +KEE D++ +L +++NL + +I E
Sbjct: 126 PEVWPFLLGVYDLKSNKEERDSIRQLKLTEYENLRRQCREIHE 168
>At3g49980.1 68416.m05465 F-box family protein similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains Pfam PF00646: F-box domain; contains
TIGRFAM TIGR01640 : F-box protein interaction domain
Length = 382
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 351 LREAKKKLMHLWNWLEKNSK-ISWMKLIKLMSGVYEYMWLG 470
L++A ++ + + N ++ +K +SW KL ++ G YMW G
Sbjct: 266 LKDAPRREIWITNKMDDETKEMSWRKLFEVEVGTRYYMWSG 306
>At3g28270.2 68416.m03531 expressed protein similar to At14a protein
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 374
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 224 KKNSVDKSTG-HHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALMELARE 400
+K S +K G K ++K E LK ++G P + F+R K++ ++L+E E
Sbjct: 136 EKESAEKDVGGKKKKYEKTLEDLKSFKEMGDPFDGKVLTT--QFERIKKQQESLLEEVSE 193
Query: 401 KFQNLLDEIDQIDE 442
+ + DEI +++
Sbjct: 194 TRKKIQDEISNLEK 207
>At3g28270.1 68416.m03530 expressed protein similar to At14a protein
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 374
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 224 KKNSVDKSTG-HHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALMELARE 400
+K S +K G K ++K E LK ++G P + F+R K++ ++L+E E
Sbjct: 136 EKESAEKDVGGKKKKYEKTLEDLKSFKEMGDPFDGKVLTT--QFERIKKQQESLLEEVSE 193
Query: 401 KFQNLLDEIDQIDE 442
+ + DEI +++
Sbjct: 194 TRKKIQDEISNLEK 207
>At1g72100.1 68414.m08334 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to embryogenic gene [Betula
pendula] GI:4539485; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 480
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 354 REAKKKLMHLWNWLEK-NSKISWMKLIKLMSGVYEYMWLG 470
+E ++KL L L K N+ SW+ ++ LMS + +++LG
Sbjct: 434 QELRRKLEQLSERLSKLNTYSSWLNILTLMSLTWHFVYLG 473
>At3g48080.1 68416.m05242 lipase class 3 family protein / disease
resistance protein-related similar to disease resistance
protein/lipase homolog EDS1 GI:4454567; contains Pfam
profile PF01764: Lipase
Length = 629
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 221 AKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSI-ENFKRSKEEVDALMELAR 397
A+K V+ D++ E L W +++ P+ + ++FK S EE D + R
Sbjct: 371 AEKQRVENQKKIETKRDQIVERLTWIVEVYKPKCQAHKNGYYDSFKDSNEENDFKANVKR 430
Query: 398 EKFQNLLDEI 427
+ + DE+
Sbjct: 431 VELAGIFDEV 440
>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
protein contains Pfam profile PF00226: DnaJ domain
Length = 2554
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +2
Query: 395 REKFQNLLDEIDQIDEWGVRVHVAGRLSLLPEHLRSLVSKVMLATKDNNRLCLNIAYAYT 574
R +NL DEI Q W + HV SLL L K M ++ L I+
Sbjct: 1453 RYYLRNLCDEI-QFPNWPIVEHVEFLQSLLVMWREELTRKPMDLSEGEACKILEISLNNV 1511
Query: 575 GRDEISRAAS 604
D+++R AS
Sbjct: 1512 SSDDLNRTAS 1521
>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to CLATHRIN
COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
SWISSPROT:Q61548
Length = 599
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 260 KGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALMELAREK 403
K F++L + WC ++GI + Y IE K +++++D + E R+K
Sbjct: 281 KQFEELDQFYSWCKNMGIARSSEYP-EIE--KITQKKLDLMDEFIRDK 325
>At5g20600.1 68418.m02446 expressed protein
Length = 532
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 381 LWNWLEKNSKISWMKLIKLMSGVYEYMWLGDSHCYRS 491
L WL + ++IS + KL G++ +W D Y+S
Sbjct: 43 LRTWLPEQTEISDEDMKKLWQGIFYCVWHADKSLYQS 79
>At3g18550.1 68416.m02359 TCP family transcription factor, putative
similar to teosinte branched1 protein GI:13649866
[Danthoniopsis dinteri]
Length = 434
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 263 GFDKLSETLKWCLDLGIPEVTVYAFSIEN 349
GFDK S+T++W L PE+ A ++ +
Sbjct: 184 GFDKASKTVEWLLTQAKPEIIKIATTLSH 212
>At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identical
to vernalization 2 protein [Arabidopsis thaliana]
gi|16945788|gb|AAL32135
Length = 380
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 363 KKKLMHLWNWLEKNSKISWMKLIKLMSGVYEYMWLGDSHCYRS 491
+K+ MHLWN + ++ I V+ + + HCY S
Sbjct: 256 EKQFMHLWNSFVRKQRVIADGHISWACEVFSRFYEKELHCYSS 298
>At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identical
to vernalization 2 protein [Arabidopsis thaliana]
gi|16945788|gb|AAL32135
Length = 440
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 363 KKKLMHLWNWLEKNSKISWMKLIKLMSGVYEYMWLGDSHCYRS 491
+K+ MHLWN + ++ I V+ + + HCY S
Sbjct: 316 EKQFMHLWNSFVRKQRVIADGHISWACEVFSRFYEKELHCYSS 358
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,436,524
Number of Sequences: 28952
Number of extensions: 283542
Number of successful extensions: 903
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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