Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0149
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   4.4  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   5.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   7.6  

>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 174 SRSLDCKINQHKKKMKIFFNVLLRISKLVNLECRQ 278
           SRS D K N H+   K FF++++ +  L   + R+
Sbjct: 242 SRSSDSKYNDHQFVKKNFFSIIMVLESLAKSQYRK 276


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 256  NLEIRSRTLKNIFIFFL 206
            +LE+RSR L+N+F  FL
Sbjct: 1418 DLEVRSRALQNLFYIFL 1434


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 158 GYREYIFTITLSFNVKKIFVLIKHMYLVRKKFELCCNLKFHSVL 27
           G+R       L   V  +F ++ + ++ RK + LC N K   VL
Sbjct: 82  GWRTVFMIEYLGPLVIHLFFILNYKWIYRKDYNLCLNQKIAFVL 125


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 481 IYFHS*NYFSRFFQAFLFLSFMIKY 555
           I+    NYF  FF  F F S++IKY
Sbjct: 254 IHLSQINYFLWFFFFFSFPSYIIKY 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,358
Number of Sequences: 5004
Number of extensions: 52543
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)