Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0149
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322...    32   0.49 
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281...    31   1.1  
09_02_0158 - 5102148-5103818                                           29   3.4  
09_06_0345 + 22428356-22428547,22428920-22429363                       28   7.9  

>04_01_0246 +
           3225743-3226473,3226493-3226624,3227580-3227670,
           3228617-3229074,3229342-3229864
          Length = 644

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = -2

Query: 230 EKYFHFFFMLVYLAIEGSGLQCH*GYREYIFTITLSFN-VKKIFVLIKHMYLVRKKFELC 54
           EK +  F  LVY  ++ S L+ H   +E +   T  +  VK I   + H++  R++F L 
Sbjct: 438 EKAYTIF--LVYEFVDNSNLRVHLHEKEAVLPWTTRYKIVKDICAALVHLHHERRQFVLH 495

Query: 53  CNLKFHSVLQREYIN 9
            N+K +++L  +  N
Sbjct: 496 RNIKPNNILLDKEFN 510


>04_01_0223 +
           2813129-2814014,2815928-2816309,2816358-2816459,
           2816727-2817249
          Length = 630

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 218 HFFFMLVYLAIEGSGLQCH*GYREYIFTITLSFN-VKKIFVLIKHMYLVRKKFELCCNLK 42
           H  F LVY  ++ S L+ H   +E +   T  +  VK I   + H++  R+ F L  N+K
Sbjct: 427 HTIF-LVYEFVDNSNLRVHLHEKEAVLPWTTRYKIVKDICAALVHLHHERRPFVLHRNIK 485

Query: 41  FHSVLQREYIN 9
            +++L  +  N
Sbjct: 486 PNNILLDKEFN 496


>09_02_0158 - 5102148-5103818
          Length = 556

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 349 IKFHINQTNLDICFLQN-LRLILIHCLHSKLTN 254
           I FH+ QT LD+  L N +   ++  LHS+L N
Sbjct: 236 ISFHMKQTTLDLLVLHNQIPFFVLTELHSRLKN 268


>09_06_0345 + 22428356-22428547,22428920-22429363
          Length = 211

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 322 LDICFLQNLRLILIHCLH 269
           L +CF+ NLR    HCLH
Sbjct: 80  LSMCFMTNLRQATSHCLH 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,021
Number of Sequences: 37544
Number of extensions: 242266
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)