Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0149
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35595-9|CAA84638.1|  367|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z92796-6|CAB63232.1|  405|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine re...    28   7.0  

>Z35595-9|CAA84638.1|  367|Caenorhabditis elegans Hypothetical
           protein C01G6.9 protein.
          Length = 367

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 174 SRSLDCKINQHKKKMKIFFNVLLRISKLVNLECRQCIRINLK 299
           SR  D K  Q   KMK  FN +++  +L+ +E  QCI  +LK
Sbjct: 49  SRKWDQKCAQ---KMKSDFNGIVKYEELIRIELNQCINEDLK 87


>Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical
           protein C25F9.13 protein.
          Length = 224

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +1

Query: 394 FSTKIQVVDHYLFLHYNMVHIIFVARYKKIYFHS*N--YFSRFFQAFLFLSFMIKYKYTE 567
           F+ K+Q+   Y  +  N++H I +   KK+ + S N          FLFL F      T 
Sbjct: 18  FAAKLQIFISYFGVFLNILHFIILCN-KKLRYQSVNVLLIGIAISDFLFLIFYFD-GGTR 75

Query: 568 RFIDLSIRYHC 600
            F+   + Y C
Sbjct: 76  DFLQAGVPYEC 86


>Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.2 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 361 ITNKIKFHINQTNLDICFLQNLRLILIHCLHSK 263
           + +K    +  T+L ICF+ N  LI I   HSK
Sbjct: 2   LNHKHTIFVTSTSLLICFIANFILIYISLFHSK 34


>Z92796-6|CAB63232.1|  405|Caenorhabditis elegans Hypothetical
           protein H25K10.7 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +1

Query: 370 EYVTNLVRFSTKIQVVDHYLFLHYNMVHIIFVARYKKIYFHS*NYFS-RFFQAFLFLSFM 546
           +++T +  FS+K Q V     L  N+VH+I + R K +  +S          + L+  F 
Sbjct: 26  DFLTKINNFSSKYQCVFSCSGLLINLVHLIIITR-KSLRVNSVYVIMIGITLSDLYTMFH 84

Query: 547 IKYKYTERFIDLSIRYHCLAYFTVNQSF 630
           + Y + +  +     Y C    T  + F
Sbjct: 85  VVYVFLDNIVSNYNWYECFQVCTEQECF 112


>AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein133 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 215 FFFMLVYLAIEGSGLQCH*GYREYIFTITLSFNVKKIFVL 96
           F   + +  ++  GLQ    Y +Y+F++ L+ N    FV+
Sbjct: 290 FSMAVTWFFVDVPGLQLIFSYSQYLFSVVLTINTSSHFVI 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,894,923
Number of Sequences: 27780
Number of extensions: 277825
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)