Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0149
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33205.1 68415.m04068 TMS membrane family protein / tumour di...    30   1.2  
At2g40910.2 68415.m05048 F-box protein-related similar to  F-box...    28   4.9  
At2g40910.1 68415.m05049 F-box protein-related similar to  F-box...    28   4.9  

>At2g33205.1 68415.m04068 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 421

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 298 LRLILIHCLHSKLTNLEIRSRTLKNIFIFFLCWFILQS 185
           L ++++  LHSK+ N  + S  +   +I FLCW  ++S
Sbjct: 240 LIVMMVISLHSKVKNRGLLSSGIMASYIVFLCWSAIRS 277


>At2g40910.2 68415.m05048 F-box protein-related similar to  F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 442

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 582 KYSLSLSCLFYCQSVFCGLSLKVIPSINRC 671
           ++S  +SC ++C S+F  ++ K  P I+ C
Sbjct: 88  QWSSLISCRYFCNSLFTSVTRKKQPHIHMC 117


>At2g40910.1 68415.m05049 F-box protein-related similar to  F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 449

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 582 KYSLSLSCLFYCQSVFCGLSLKVIPSINRC 671
           ++S  +SC ++C S+F  ++ K  P I+ C
Sbjct: 95  QWSSLISCRYFCNSLFTSVTRKKQPHIHMC 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,803
Number of Sequences: 28952
Number of extensions: 234373
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)