Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0148
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    28   1.1  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.1  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    27   2.5  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    27   3.3  
SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...    27   3.3  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    26   5.8  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   7.7  

>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = -3

Query: 455 APRLRPVQGIAPTRIPTKDLATPLNQIH*AVTITTRSLSQSSGWCAPETRANYLPPTSET 276
           AP  +PV+   P  +P +  +        A  +   SLSQ+SG          LP     
Sbjct: 51  APAAQPVESSVPLPLPKRKSSVEKRAGSVASAVAAMSLSQNSGEKRTPEEPRKLPGVPAP 110

Query: 275 GSSARASSCRTPT 237
              + ASS  + T
Sbjct: 111 QKQSEASSVNSST 123


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 59   PYTHAADLLEIKEENNDKGDIFYASCDEDNDCVTIELPCE 178
            P+ H+  L +I+ E+  +GD+FY +  +  D  +   P +
Sbjct: 1024 PHRHSVSLGQIRGESEVEGDVFYDAPSDKEDLGSSNAPLD 1063


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 167 LPCEEEIPVQTEIDSVKNDSSAITLECD---MKMLSPMTLSPKS 289
           +P   E+PV+T +DSV   ++A++   +   M   SP+   P+S
Sbjct: 147 IPNTPELPVKTTLDSVNEIAAALSTHAESSPMDATSPVDSMPES 190


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 342 KSELRLVCAGDKSKLSSTDFGDRVIGESIFMSHSNVIAE 226
           + E  L  + D  K ++ DFGD    E     H N++A+
Sbjct: 239 EDEEGLSLSEDGKKFANIDFGDYSSSEEFLKEHLNILAD 277


>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 608 HIYYIEPLQYIDEVATIFKQLVCHFFHLNIT 516
           H+  IEP +YID++A     L C  FH   T
Sbjct: 70  HLMVIEPERYIDQLADAGASLFC--FHYEAT 98


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 506 LKTYN*SV-FGGNFFQNYAPRLRPVQGIAPTRIPTKDLATPLNQ 378
           LKT   S+ F GNF     P+LR V+G    +  + D   P  Q
Sbjct: 292 LKTVAGSIDFTGNFSSVELPKLRDVKGGLNIQTTSSDFTCPFRQ 335


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 149 HYLRHSLRR--ICRLYRCSPL*FREGLLRVCRDEHKSVVPASC 27
           H   HS  R  +C    CS   +R+  L++ +  H +V P SC
Sbjct: 43  HLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSC 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,682
Number of Sequences: 5004
Number of extensions: 50932
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)