Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0148
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745...    31   0.64 
11_04_0407 + 17335773-17335777,17335930-17336635,17336844-173375...    31   1.1  
08_02_0766 - 20993207-20993307,20993510-20993612,20993686-209937...    28   6.0  
03_01_0380 + 2955102-2955357,2955468-2956189                           28   6.0  

>03_05_0261 -
           22470565-22470714,22472101-22474270,22474368-22474540,
           22474763-22474924,22476420-22476560
          Length = 931

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 290 PTSETGSSARASSCRTPT*SLNYRSSPNQS 201
           P  + G    A SC +PT SL  + SPN+S
Sbjct: 12  PPEQVGDGVEARSCASPTPSLRRKGSPNRS 41


>11_04_0407 +
           17335773-17335777,17335930-17336635,17336844-17337542,
           17340710-17340724,17341479-17342126
          Length = 690

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +2

Query: 14  LQEFGTRLAQHSYAHPYTHAADLLEIKEENNDKGDIFYASCDEDNDCVTIELPCEEEIPV 193
           ++E    + QH Y H YTH   L E +   N   ++F  +        +  L     I V
Sbjct: 445 IREIAAEILQHVYFHDYTHRLSLTEKEASTNLVAELFRTNSQMGTQAQSGAL----AITV 500

Query: 194 QTEIDSVK 217
           + E D VK
Sbjct: 501 EAEHDGVK 508


>08_02_0766 -
           20993207-20993307,20993510-20993612,20993686-20993730,
           20993848-20993916,20994463-20994510,20995357-20995404,
           20995492-20995551,20996063-20996119,20996403-20996471,
           20996511-20996603
          Length = 230

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -3

Query: 368 AVTITTRSLSQSSGWCAPETRANYLPPTSETGSSARAS 255
           ++T+ T +LS S GW AP   AN+    +E+ S ++A+
Sbjct: 91  SLTVMT-ALSVSLGWVAPNLDANFKSNKAESKSKSKAN 127


>03_01_0380 + 2955102-2955357,2955468-2956189
          Length = 325

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 95  EENNDKGDIFYASCDEDNDCVTIELPCEEEIPVQTEIDSVKN-DSSAITLECDMKMLSPM 271
           + N  K  I   S DED + ++ ELP   EI    EI +V N +S +   +     L+ +
Sbjct: 215 DSNLKKVRIALDSDDEDENILSYELPAISEIS-SVEIGNVSNVNSLSAAADYLSAPLNVL 273

Query: 272 TLSPKSVEDNLLLSPAHTNLS 334
           T + K VE+ + +     +++
Sbjct: 274 TSAAKEVEEPICIDAIDVDMN 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,813,859
Number of Sequences: 37544
Number of extensions: 327547
Number of successful extensions: 844
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)