Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0148
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    29   2.3  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    29   2.3  
U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric chr...    29   3.1  
AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like p...    29   3.1  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z68319-3|CAA92701.1|  339|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 197 TEIDSVKNDSSAITLECDMKMLSPMTLS 280
           T I S++ DSS + L+ D+  LSP+ LS
Sbjct: 562 TRIQSIRMDSSKLCLDADLCGLSPLVLS 589


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9a protein.
          Length = 1019

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 197 TEIDSVKNDSSAITLECDMKMLSPMTLS 280
           T I S++ DSS + L+ D+  LSP+ LS
Sbjct: 673 TRIQSIRMDSSKLCLDADLCGLSPLVLS 700


>U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -3

Query: 479 GGNFFQNYAPRLRPVQGIAPTRIPTKDLATPLNQIH*AVTITTRSLSQSSGWCAPETRAN 300
           G NFF++   ++RPV    P    T  L+T  N+     TI   S+++     A    ++
Sbjct: 434 GANFFKHPRKKIRPVVQTPPRIKATSRLSTESNKER---TIEMESVAEERTMEADSIGSS 490

Query: 299 YLPPT 285
           Y+ PT
Sbjct: 491 YISPT 495


>AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like
           protein HCP-4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -3

Query: 479 GGNFFQNYAPRLRPVQGIAPTRIPTKDLATPLNQIH*AVTITTRSLSQSSGWCAPETRAN 300
           G NFF++   ++RPV    P    T  L+T  N+     TI   S+++     A    ++
Sbjct: 434 GANFFKHPRKKIRPVVQTPPRIKATSRLSTESNKER---TIEMESVAEERTMEADSIGSS 490

Query: 299 YLPPT 285
           Y+ PT
Sbjct: 491 YISPT 495


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 42  NTLMLIPTHTQQTFSKSKRRTTIKATYSTQAVTKIMIASR*N 167
           NT+   P  T  T + +KR TT KAT  T   T  +I  R N
Sbjct: 281 NTVTKPPRRTTTTRTTTKRLTTTKATLKTTTKTLPVIPPRPN 322


>Z68319-3|CAA92701.1|  339|Caenorhabditis elegans Hypothetical
           protein T23G7.3 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 25/79 (31%), Positives = 34/79 (43%)
 Frame = +2

Query: 62  YTHAADLLEIKEENNDKGDIFYASCDEDNDCVTIELPCEEEIPVQTEIDSVKNDSSAITL 241
           +T A D     + +  KG + Y     DN         EE+I  +TE  SVK+DSS    
Sbjct: 133 FTRAKDTSNYSDSHK-KGILGYGRLKSDN--------AEEKIEEKTENSSVKSDSSDSQA 183

Query: 242 ECDMKMLSPMTLSPKSVED 298
           +   K     T+S  SV D
Sbjct: 184 DSQEKKEGNNTVSTLSVGD 202


>Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical
           protein T05A6.4 protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 323 CAPETRANYLPPTSETGSSARASSCRTPT*SLNYRSSPNQSLSEL 189
           C PE   NY   TSET +    S C      L + S  + S+S+L
Sbjct: 38  CEPECTFNYSEVTSETINFLPGSECGIVCGILTFNSRTDLSISQL 82


>Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical
           protein C14B1.4 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 320 APETRANYLPPTSETGSSARASSCRTP 240
           AP T  N + P++ TG+ A  +S +TP
Sbjct: 36  APSTSPNSISPSNPTGTPAPGASAQTP 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,469,909
Number of Sequences: 27780
Number of extensions: 292289
Number of successful extensions: 921
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)