Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0148
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.38 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.3  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 182 EIPVQTEIDSVKNDSSAITLECDMKMLSPMTLSPKSVED 298
           EIP++ E    +N+S      C++   SP T+ P+++ D
Sbjct: 338 EIPLEEEEWENENESDYQDAFCNIVSCSPQTVHPETIID 376



 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 41  QHSYAHPYTHAADLLEIKEENNDKGDIFYA 130
           +HSY H  T    LL I ++    GDI Y+
Sbjct: 128 KHSYVHTITVPNKLLRISQD----GDILYS 153


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 366 RSVNLIQWSCQIFGGNPCRSYSLDWPKSRG 455
           RSV L  W+    G +P + Y +++  S+G
Sbjct: 890 RSVQL-SWAAPYDGNSPIKRYVIEYKISKG 918


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 527 LNITFQ*LKTYN*SVFGGNFFQNYAPRL 444
           LN+ F+   T+N S +    F N+ PRL
Sbjct: 334 LNVHFRSPSTHNMSPWVRQVFLNWMPRL 361


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/26 (23%), Positives = 14/26 (53%)
 Frame = -1

Query: 142 FVTACVEYVAFIVVLLFDFEKVCCVC 65
           +V+    YV+ + ++ F  E+   +C
Sbjct: 119 YVSEMSSYVSVLTIVAFSMERYLAIC 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,641
Number of Sequences: 438
Number of extensions: 3535
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)