Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0148
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61380.1 68414.m06917 S-locus protein kinase, putative simila...    29   2.9  
At3g49410.1 68416.m05401 transcription factor-related contains w...    29   3.8  
At5g55820.1 68418.m06956 expressed protein                             28   5.0  
At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1...    28   6.6  
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ...    28   6.6  
At1g49580.1 68414.m05559 calcium-dependent protein kinase, putat...    28   6.6  
At5g18260.1 68418.m02146 expressed protein                             27   8.8  
At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein gar2...    27   8.8  
At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein gar2...    27   8.8  
At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kina...    27   8.8  

>At1g61380.1 68414.m06917 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 805

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 378 LIQWSCQIFGGNPCRSYSLDWPKSRGVI 461
           ++  S  IF  +PC  + LDWPK   +I
Sbjct: 564 MVNKSLDIFIFDPCLKFELDWPKRFNII 591


>At3g49410.1 68416.m05401 transcription factor-related contains weak
           similarity to transcription factor IIIC63 (GI:5281316)
           [Homo sapiens]
          Length = 559

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 200 EIDSVKNDSSAITL-ECDMKMLSPMTLSPKSVEDNLLLSPAHTN 328
           ++D +   S  + L + D+ ML P   +PK + DN+ L P  T+
Sbjct: 151 DVDPLTGKSDLMGLADEDVMMLLPQFFAPKDIPDNVALKPPATS 194


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 311  TRANYLPPTSETGSSARASS-CRTPT*SLNYRSSPNQSLSE 192
            T  +Y      TGSSA A + C +PT  L YRS    S SE
Sbjct: 1263 TGRSYTDSLPGTGSSAEARNPCMSPTEKLWYRSLQKSSSSE 1303


>At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1)
           identical to phospholipase D zeta1 [Arabidopsis
           thaliana] GI:15723315, SP|Q9LRZ5 Phospholipase D p1 (EC
           3.1.4.4) (AtPLDp1) (Phospholipase D1 PHOX and PX
           containing domain) (Phospholipase D zeta 1) (PLDzeta1)
           {Arabidopsis thaliana}; supported by cDNA gi:15723314;
           non-consensus splice site (GC) at the beginning of first
           intron.
          Length = 1096

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 362 TITTRSLSQSSGWCAPETRANYLPPTSETGSSARA 258
           +I   +L    GWC P    +Y PP   T   ++A
Sbjct: 336 SINDAALRPPEGWCHPHRFGSYAPPRGLTDDGSQA 370


>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 917

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 137 DEDNDCVTIEL-PCEEEIPVQTEIDSVKNDSS 229
           DED++CV I L  CE+E P+Q      K+ SS
Sbjct: 490 DEDDECVEIGLGSCEQE-PIQERFGDDKDPSS 520


>At1g49580.1 68414.m05559 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK3 [Nicotiana tabacum]
           gi|16904226|gb|AAL30820; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 606

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 636 YNTYMNIPMTHLLYRTITIHRRSSN 562
           YNT MNIP   L++R +  + RSS+
Sbjct: 415 YNTDMNIPFDILIFRQMKAYLRSSS 439


>At5g18260.1 68418.m02146 expressed protein
          Length = 320

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 173 CEEEIPVQTEIDSVKNDSSAITLECDMKMLSPM--TLSPKSVEDNLLLSPAHTN 328
           CE   P  T+ DS  N  S+I +       SP+   +SP S  +++LL    +N
Sbjct: 120 CENPEPDHTQEDSSTNPGSSIMMSTRNHQGSPVEEEVSPNSSSNDMLLDVERSN 173


>At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein
           gar2-related contains weak similarity to
           Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
           pombe]
          Length = 439

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 65  THAADLLEIKEENNDKGDIFYASCDEDNDCVTI-ELPCEEEIPVQTEIDSVKNDSSAITL 241
           TH     EI+ + N K ++  +  ++  +C+T+ ++   E+       D++ +DS     
Sbjct: 218 THGLSPSEIEPDENSKDEVAISQDNDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQS 277

Query: 242 ECDMKMLSPMTLSPKSVEDNL 304
              ++     +L   ++E  L
Sbjct: 278 PSQLQDKEKRSLETTAIETEL 298


>At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein
           gar2-related contains weak similarity to
           Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
           pombe]
          Length = 439

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 65  THAADLLEIKEENNDKGDIFYASCDEDNDCVTI-ELPCEEEIPVQTEIDSVKNDSSAITL 241
           TH     EI+ + N K ++  +  ++  +C+T+ ++   E+       D++ +DS     
Sbjct: 218 THGLSPSEIEPDENSKDEVAISQDNDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQS 277

Query: 242 ECDMKMLSPMTLSPKSVEDNL 304
              ++     +L   ++E  L
Sbjct: 278 PSQLQDKEKRSLETTAIETEL 298


>At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kinase
           family protein low similarity to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profile PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase
          Length = 1456

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 32  RLAQHSYAHPYTHAADLLEIKEENNDKGDI-FYASCDEDNDCVTIELPCEEEIPVQTEID 208
           RL + S + P +   D+L+ K + N   ++ F +  ++D+D V +  P E E P + E+D
Sbjct: 52  RLERKSKSMP-SDILDILDEKSKENSVENVQFLSDREDDSDDVPVWEPPEPENP-EDEVD 109

Query: 209 SVKND 223
            V  D
Sbjct: 110 GVFAD 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,518,434
Number of Sequences: 28952
Number of extensions: 265989
Number of successful extensions: 748
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)