Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0147
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0E4T1 Cluster: Chromosome undetermined scaffold_79, wh...    34   4.0  
UniRef50_Q98S10 Cluster: Putative uncharacterized protein orf277...    33   7.0  

>UniRef50_A0E4T1 Cluster: Chromosome undetermined scaffold_79, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_79,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 634

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = -3

Query: 471 MKSVKKSFTVLE*ISNISNFGLLNIIRFLFFISNFPSDKSLLCRCSQMLV*AILIKSGXX 292
           + S+ K    ++  +NI N  + +I     F+SN P+   ++  CS + V AI + SG  
Sbjct: 346 LSSMNKDIEKIKTYNNIQNLNIYHIQAIPLFLSNDPNQTHVIVGCSDLSVRAINLYSGRI 405

Query: 291 XXXXXXXXXXXXRCKITIDYN 229
                         KI I  N
Sbjct: 406 QVLGKHQKPIRSITKIVIQQN 426


>UniRef50_Q98S10 Cluster: Putative uncharacterized protein orf277;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf277 - Guillardia theta (Cryptomonas phi)
          Length = 277

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
 Frame = +2

Query: 371 FEIKNKNRIIFNRPKLEM---LLIYSKTVKDFFTDFILIKL*THSCLKLKSFIKPYPIIL 541
           +  KN++   + +  ++M   L    K   +F  +F L  L   S     +F+K + +I 
Sbjct: 77  YRFKNESNEKYGKRLIDMCKFLFEIEKKHYNFILNFSLADLNYLSFNNFIAFVKSFKVIY 136

Query: 542 NNEFT*NNTIKRCFYNKVEPNIFCYS*LDFKSCSIKN--SSQIILILN*NRIFAIIFK 709
            N    NN+I+  F  K+    FC    ++KS  + N  S    ++L  N  F I +K
Sbjct: 137 INFLIDNNSIRNKFLCKLSGG-FCLKIKEYKSIDVANMFSDHFQILLKKNLSFFINYK 193


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,065,089
Number of Sequences: 1657284
Number of extensions: 11173732
Number of successful extensions: 22797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22792
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)