Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0147
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.3  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   5.7  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   5.7  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   7.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   7.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 326 SICEQRHSRLLSLGKFEIKNKNRIIFNRPKLEMLLIYSKTVK--DFFTDFI 472
           S C     +   + KF+ ++K   I  +   E  LI+ +T +  DF   F+
Sbjct: 379 SACTDVEQKFFQVSKFDKRSKLVSILEKAPNERTLIFVETKRNADFLATFL 429


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 286 QTEINQKYTQSVQNYNRLQ 230
           Q   N +Y Q+  NYN  Q
Sbjct: 210 QFNFNYQYNQAYSNYNNYQ 228


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 286 QTEINQKYTQSVQNYNRLQ 230
           Q   N +Y Q+  NYN  Q
Sbjct: 230 QFNFNYQYNQAYSNYNNYQ 248


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 161 CPTNDRRASQSTAL 202
           CP  DRR SQS+++
Sbjct: 52  CPVCDRRFSQSSSV 65


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 161 CPTNDRRASQSTAL 202
           CP  DRR SQS+++
Sbjct: 308 CPVCDRRFSQSSSV 321


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,717
Number of Sequences: 336
Number of extensions: 3150
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)