Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0147
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   6.2  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    25   8.2  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   8.2  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 607 YIWFDFIIKAPFDCVVLCKFVVQNNRIGLDEA 512
           Y WFDF ++   D  V  ++    N   LDEA
Sbjct: 796 YDWFDFFLRCGVDFTVCNRYTHNFNNEHLDEA 827


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 298 LATTQTEINQKYTQSVQNYNRLQS 227
           LA+ Q E   +Y   +Q YN+LQS
Sbjct: 602 LASMQREFETRYRAQIQAYNKLQS 625


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 234 YNRFDRLNNRLSAVD*LARRSLVGHPRFSNSKCCYRN 124
           YN++    +  +  +    R+  GHPRF NS+  Y N
Sbjct: 314 YNKYSHYQHGFNYNNSGNNRNESGHPRFRNSRRNYNN 350


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 299 PDLINIAYTSICEQRHSRL 355
           PD++N +Y ++CE  +SRL
Sbjct: 319 PDILNDSYLAMCEAVNSRL 337


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 710 T*KLWQIFCFNLKLRLFGYYF*LSMI 633
           T K+W    F L+  LFG+Y  +S +
Sbjct: 77  TIKIWSALTFRLECTLFGHYRGISQV 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,695
Number of Sequences: 5004
Number of extensions: 51801
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)