Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0147
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.0  
SB_29353| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 28   8.7  

>SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 299 PDLINIAYTSICEQRHSRLLSLGKFEIKNKNRIIFNRPKLEMLLIYSKTVKDFF-TDFIL 475
           P+L+N   T  CEQ    +L+LG +    +  + F RP    L  Y+  +  ++   F+L
Sbjct: 76  PELLNQVITVSCEQNGQSILALG-YRSVGQQEVNFARPHTVKLWNYNTIMGMYYRRSFVL 134

Query: 476 I 478
           +
Sbjct: 135 L 135


>SB_29353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = +3

Query: 495 LASNLKASSSPILLF*TTNLHKTTQSKGAFIIKSNQIYFVIA 620
           L++ +K  S  I++F      K  ++ G F++++N ++FV++
Sbjct: 120 LSARIKVESQSIVVF-RIKYRKIAKAFGTFVLRANSLWFVLS 160


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 295 ATTQTEINQKYTQSVQNYNRLQSFRSTE*SIERSRLTRPSVISW 164
           AT +T++ +K+   VQ Y  ++ F+  + S      T P ++SW
Sbjct: 84  ATAETKLGEKF--QVQGYPTIKFFKDGKPSEYAGGRTAPEIVSW 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,334,288
Number of Sequences: 59808
Number of extensions: 341274
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)