Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0147
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.7  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 249 KITID-YNRFDRLNNRLSAVD*LARRSLVGHPRFSNSKCCYRNSLIITIRLESLSNASSV 73
           +I ID ++R   L+N +S    +    +V      NSK   +  +   I + S +   +V
Sbjct: 127 RIAIDEWDRLWVLDNGISGETSVCPSQIVVFD-LKNSKLLKQVKIPHDIAINSTTGKRNV 185

Query: 72  ITPIIQ 55
           +TPI+Q
Sbjct: 186 VTPIVQ 191


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 80  LALDRDSSRIVIINELR*QHFEFENRGCPTND 175
           LAL  D ++ V+ N+L  +H  F+  G   ND
Sbjct: 377 LALS-DRNQNVLNNDLNLEHVNFQILGANVND 407


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 120 TNYDSNISNSRIGDVQLMTDGRVNRLRSID 209
           ++YD    NS+IG  +L   G +N   S D
Sbjct: 139 SSYDPYSPNSKIGRDELSQPGSLNGYGSSD 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,289
Number of Sequences: 438
Number of extensions: 4108
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)