Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0147
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34950.1 68417.m04954 nodulin family protein similar to nodul...    28   5.4  
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi...    28   5.4  
At4g35460.1 68417.m05040 thioredoxin reductase 1 / NADPH-depende...    28   7.1  
At4g17695.1 68417.m02643 myb family transcription factor (KAN3) ...    28   7.1  

>At4g34950.1 68417.m04954 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 567

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 600 GSTLL*KHLLIVLFYVNSLFRIIG*GLMKLLSLRQECVYNFI-KMKSVKKS 451
           G+T +  H   ++F V +   IIG GL  LL+ R + +Y  I   K  KKS
Sbjct: 512 GNTCVGAHCFRIVFIVMAFASIIGVGLDLLLAYRTKGIYAKIHASKKTKKS 562


>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 721

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +2

Query: 425 LLIYSKTVKDFFTDFILIKL*THSCLKLKSFIKPYPIILNNEFT*NNTIKRCFYNKVEPN 604
           LL+ S   +D FT   L  L   S +   +++  + + L ++    +  +  FY+  EPN
Sbjct: 14  LLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPN 73

Query: 605 IFCYS 619
           +F Y+
Sbjct: 74  VFSYN 78


>At4g35460.1 68417.m05040 thioredoxin reductase 1 / NADPH-dependent
           thioredoxin reductase 1 (NTR1) identical to SP|Q39243
          Length = 375

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -2

Query: 355 ESAVPLFANAGIGDIN*IRLATTQTEINQKYTQSVQNYNRLQSFRSTE*SIERSRLTRPS 176
           + A P+F N  +  I     A  +     KY   V   +R  +FR+++  +++  L+ P 
Sbjct: 193 DGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASK-IMQQRALSNPK 251

Query: 175 V-ISWTSPILE 146
           + + W S ++E
Sbjct: 252 IDVIWNSSVVE 262


>At4g17695.1 68417.m02643 myb family transcription factor (KAN3)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA GARP-like putative
           transcription factor KANADI3 (KAN3)  GI:15723596
          Length = 322

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 143 EFENRGCPTNDRRASQSTAL 202
           E++NR CP+N+R +S S++L
Sbjct: 280 EWKNRRCPSNERLSSDSSSL 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,927,867
Number of Sequences: 28952
Number of extensions: 240092
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)