Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0146
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    29   0.86 
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   4.6  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   6.0  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    26   6.0  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   8.0  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   8.0  

>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 305 VAQSSPAPRYRPRIWLNAPSKFWM 234
           ++QSSP+P   P  W N  +  W+
Sbjct: 126 ISQSSPSPSLNPESWTNFANMLWL 149


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 233  TSKTY-LEHLAIFLAGNEEREKIAPRSAYEQRDDVSSING 349
            T +T+ +E++A +LA   ER  +AP       DD+  + G
Sbjct: 963  TIRTFVIENIAKYLASVRERRDLAPMLEEPDMDDLDDMEG 1002


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 605 GYREYIFTITLSFNVKKIFVLIKHMYLVRKKFELCCNLKFHSVL 474
           G+R       L   V  +F ++ + ++ RK + LC N K   VL
Sbjct: 82  GWRTVFMIEYLGPLVIHLFFILNYKWIYRKDYNLCLNQKIAFVL 125


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 114 RSICRIQQRHYSSLYPWRLQSLK 182
           +S+ RI++R Y+S  PW   S++
Sbjct: 335 KSLLRIRERRYASFIPWGPASIQ 357


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 25  SPGNSKGRASRQLYTHRPSKKHPSRHVDCYEAFVVYS 135
           +P N+  R++RQ + +   K+H  R+ + + ++  YS
Sbjct: 282 TPSNTSSRSNRQNHGNFSEKRHYDRYGNSHPSYNKYS 318


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
 Frame = +2

Query: 71   TDLPRNIRQGMSIVTKHLSYTAE----ALLKSVPV--ETAI-TEIKGWRSKLEVLLQQLQ 229
            +DL R++   +S V  ++S  AE    + +KS P+  +TA  +EIKG+R ++++ +  L+
Sbjct: 1108 SDLKRDL-SALSTVLSNVSAIAELQAKSSIKSKPLTLKTATESEIKGYRDQIQLEVLNLK 1166

Query: 230  ATSKTYLE 253
              S+  L+
Sbjct: 1167 PDSEARLQ 1174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,500
Number of Sequences: 5004
Number of extensions: 64078
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)